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Faculty Publications from 2003 to 2007

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(faculty member's name in bold)

Abraham, K. F., R. L. Jefferies, and R. F. Rockwell. 2005. Goose-induced changes in vegetation and land cover between 1976 and 1997 in an Arctic coastal marsh.  Arctic, Antarctic and Alpine Research 37(3):269-275.

Abraham, K.F., R.L. Jefferies, and R.T. Alisauskas. 2005. The dynamics of landscape change and snow geese in mid-continent North America. Global Change Biology 11:841-855.

Abraham, K. F. and C. E. Keddy. 2005.  The Hudson Bay Lowland: a unique wetland legacy.  Chapter 4, Pages 118-148 in Fraser, L.H. and P.A. Keddy (eds.) 2005. The World’s Largest Wetlands: Their Ecology and Conservation. Cambridge University Press, Cambridge.

Amorim, D. S. and D. Grimaldi. 2006.  Valeseguyidae, a new family of Diptera in the Scatopsoidea, with a new genus in Cretaceous amber from Myanmar.  Systematic Entomology 29: 1-9.

Anderson, R. P. 2003. Real versus artefactual absences in species distributions: tests for Oryzomys albigularis (Rodentia: Muridae) in Venezuela. Journal of Biogeography, 30:591–605.

Anderson, R. P. 2003. Taxonomy, distribution, and natural history of the genus Heteromys (Rodentia: Heteromyidae) in western Venezuela, with the description of a dwarf species from the Península de Paraguaná. American Museum Novitates, 3396:1–43.

Anderson, R. P., D. Lew, and A. T. Peterson. 2003. Evaluating predictive models of species’ distributions: criteria for selecting optimal models. Ecological Modelling, 162:211–232.

Anderson, R. P. and E. Martínez-Meyer. 2004. Modeling species’ geographic distributions for conservation assessments: an implementation with the spiny pocket mice (Heteromys) of Ecuador. Biological Conservation, 116:167–179.

Anderson, R. P., A. T. Peterson, and S. L. Egbert. 2006. Vegetation-index models predict areas vulnerable to purple loosestrife (Lythrum salicaria) invasion in Kansas. Southwestern Naturalist, 51:471–480.

Anderson, R. P. and R. M. Timm. 2006. A new montane species of spiny pocket mouse (Rodentia: Heteromyidae: Heteromys) from northwestern Costa Rica. American Museum Novitates, 3509:1–38.

Anderson, R. P., M. Weksler, and D. S. Rogers. 2006. Phylogenetic analyses of spiny pocket mice (Heteromyidae: Heteromyinae) based on allozymic and morphological data. Journal of Mammalogy, 87:1218–1233.

Anderson, R. P. and S. A. Jansa. 2007. Genetic comparisons between Heteromys desmarestianus and the newly described H. nubicolens (Rodentia: Heteromyidae) in northwestern Costa Rica. Mammalian Biology, 72:54–61.

Antoine, P-O, D. De Franceschi, J.J. Flynn, A. Nel, P. Baby, M. Benammi, Y. Calderón, N. Espurt, A. Goswami, and R. Salas. 2006.   Western Amazonian Miocene amber with multiple organic inclusions.  Proceedings of the National Academy of Sciences USA, v. 103, no. 37, p. 13595-13600.

Aguado, M.T., Nygren, A. and SiddallM.E.  2007. Phylogeny of Syllidae (Polychaeta) based on  combined molecular analysis of nuclear and  mitochondrial genes. Cladistics.  In press

Arango, C. A., and W. C. Wheeler. 2007. Phylogeny of the sea spiders (Arthropoda, Pycnogonida) based on direct optimization of six loci and morphology. Cladistics 23:255-293.

Arva, N. C., Talbott, K. E., Okoro, D. R., Qiu, W. G. and Bargonetti, J. 2007. Disruption of the p53-Mdm2 complex by nutlin-3 reveals different cancer cell phenotypes. Ethnicity & Disease. (In press)

Asher, R. J., M. J. Novacek, and J. H. Geisler. 2003. Relationships of endemic African mammals and their fossil relatives based on morphological and molecular evidence. Journal of Mammalian Evolution, Vol. 10, 1/2: 131- 194.

Asher, R. J., J. Meng, M. C. McKenna, J. R. Wible, D. Dashzeveg, G. Rougier, and M. J. Novacek. 2005. Stem Lagomorpha and the Antiquity of Glires. Science 307: 1091-1094.

Asher, R. J., Meng, J., J. R. Wible, M. C. McKenna, G. W. Rougier, D. Dashzeveg, and M. J. Novacek. 2005.  Stem Lagomorpha and the antiquity of Glires. Science 307:1091-1094.

Attie, O.; Bruno, J. F.; Xu, Y.; Qiu, D.; Luft, B. J.; Qiu, W. G. 2007. Co-evolution of the outer surface protein C gene (ospC) and intraspecific lineages of Borrelia burgdorferi sensu stricto in the northeastern United States.  Infection, Genetics and Evolution.  7 (1):1-12

Austin CC and S. L. Perkins.  2006.  Parasites in a biodiversity hotspot: a survey of hematozoa and a molecular phylogenetic analysis of Plasmodium in New Guinea skinks.  Journal of Parasitology.  92:770-777.

Baker, M. B. 2004. Sex biased state dependence in natal dispersal in desert isopods, Hemilepistus reaumuri. Journal of Insect Behavior 17: 579-598

Baker, M. B., and S. Rao. 2004. Incremental costs and benefits shape natal dispersal; theory and an example using desert isopods, Hemilepistus reaumuri.  Ecology 85:1039-1051

Baker, M. B. 2005. Experience influences settling behavior in desert isopods, Hemilepistus reaumuri. Animal Behaviour 69: 1131-1138.

Baker, M. B., Alyokhin, A., Dastur, S. A., Porter, A. H., and Ferro, D. N. 2005. Sperm precedence in overwintered Colorado potato beetle (Coleoptera: Chrysomelidae) and its implications for insecticide resistance management. Annals of the Entomological Society of America 98: 989-995.

Baker, M. B., and A. H. Porter. Use of sperm precedence to infer the overwintering cost of resistance in Colorado potato beetle. Forest and Agricultural Entomology - in press

Baker, M. B., A. Alyokhin, A. H. Porter, D. N. Ferro, S. R. Dastur, and N. Galal. Persistence and inheritance of costs of resistance to imidacloprid in the Colorado potato beetle, Leptinotarsa decemlineata (Say). Journal of Economic Entomology – in press

Baldo, L., Prendini, L., Corthals, A. and Werren, J.. Wolbachia are present in southern African scorpions and cluster with supergroup F. Current Microbiology. (in press)

Barker, F. K., A. Cibois, P. Schikler, J. Feinstein, and J. Cracraft.  2004.  Phylogeny and diversification of the largest avian radiation.  Proc. Natl. Acad. Sci. 101:11040-11045.

Barrett, R.T., Chapdelaine, G., Anker-Nilssen, T., Mosbech A., Montevecchi, W.A., Reid, J.B., and Veit, R.R. 2006.  Seabird numbers and prey consumption in the North Atlantic.  ICES Journal of Marine Science 63: 1145-1158.

Barrett, R. T., Camphuysen, C. J., Anker-Nilssen, T., Chardine, J. W., Furness, R. W., Garthe, S., Hüppop, O., Leopold, M. F., Montevecchi, W. A., and Veit, R. R. 2008. Diet studies of seabirds: a review and recommendations. – ICES Journal of Marine Science in press.

Barrowclough, G. F.  2003.  Angel Falls, Venezuela.  Natural History 112(4A):56.

Barrowclough, G. F., and G. Hirons.  2003.  Owls. Pp. 322-335 in C. Perrins (ed.). Firefly Encyclopedia of Birds.  Firefly Books, Buffalo, NY.

Barrowclough, G. F., and R. M. Zink.  2004.  Ned K. Johnson, 1932 - 2003.  Ibis 146:567-568.

Barrowclough, G. F., J. G. Groth, L. A. Mertz, and R. J. Guti‚rrez.  2004.  Phylogeographic structure, gene flow and species status in blue grouse (Dendragapus obscurus).  Molecular Ecology 13:1911-1922.

Basil, J., Bahctinova, I., Kuroiwa, K., Lee, N., Preis, M., and C.  Soucier.  2005.  The role that tentacles and rhinophores play in odor-mediated behavior in Chambered Nautilus. Freshwater and Marine Behavior and Physiology 38 (3), pp. 209-221.

Benstead, J.P., Derham, P.H., Gattolliat, J.-L., Gibbon, F.-M., Loiselle, P.V., Sartori, M., Sparks, J.S. & M.L.J. Stiassny. 2003.  Conserving Madagascar’s freshwater  biodiversity. Bioscience 53(11): 1101-1111.

Berkov A. 2004. Lepuropetalaceae. In Smith N, Mori SA, Henderson A, Stevenson DW, & Heald SV, eds. Flowering Plants of the Neotropics. Princeton, NJ: Princeton University Press, p. 214.

Berkov A. 2004. Pterostemonaceae. In Smith N, Mori SA, Henderson A, Stevenson DW, & Heald SV, eds. Flowering Plants of the Neotropics. Princeton, NJ: Princeton University Press, p. 316.

Berkov A, Feinstein J, Centeno P, Small J, Nkamany M. 2007. Yeasts isolated from Neotropical wood-boring beetles in SE Peru. Biotropica 39: 530-538.

Bird, J.A., van Kessel, C. and W.R. Horwath. 2003. Stabilization of 13C-carbon and immobilization of 15N-nitrogen from rice straw in humic fractions. Soil Sci. Soc. Am. J. 67:806-815.

Bird, J.A. and M.S. Torn. 2006. Fine roots versus needles: A comparison of 13C and 15N dynamics in a Ponderosa pine forest soil. Biogeochemistry 79:361-382.

Birstein VJ, Ruban G, Ludwig A, Doukakis P, DeSalle R.  2005. The enigmatic Caspian Sea Russian sturgeon: how many cryptic forms does it contain?  Syst Biodiv 3:203-218

Birstein, VJ, Doukakis, P, DeSalle, R. 2005.  Baikal population of the Siberian sturgeon, Acipenser baerii:  caution for restocking programs. Journal of Heredity: (in press).

Blagoderov, V. and D. Grimaldi. 2004.  Fossil Sciaroidea (Diptera) in Cretaceous ambers, exclusive of Cecidomyidae, Sciaridae, and Keroplatidae.  American Museum Novitates 3433: 76 pp.

Blagoderov, V., D. Grimaldi, and N. Fraser. 2006.  How time flies for flies:  Diverse Diptera (Insecta) from the Late Triassic of eastern North America.  American Museum Novitates 3572:  39 pp.

Boissinot, S, C. Roos and A.V. Furano. 2004. Different rates of LINE-1 retrotransposons amplification and evolution in New World monkeys. J. Mol. Evol. 58: 122-130.

Boissinot, S., Entezam A, Young L, Munson P, and Furano AV. 2004. The insertional history of an active family of LINE-1 retrotransposons in humans. Genome Research 14: 1221-1231

Boissinot, S. and A.V. Furano. 2005. The recent evolution of human L1 retrotransposons. Cytogenetics and Genome Research 110(1-4): 402-406.

Boissinot, S., J. Davis, A. Entezam, D. Petrov and A.V. Furano. 2006. Fitness cost of LINE-1 (L1) activity in humans. Proc. Natl. Acad. Sci. USA 103 (25): 9590-9594.

Bonacum J, O'Grady PM, Kambysellis M, DeSalle R. 2005.  Phylogeny and age of diversification of the planitibia species group of the Hawaiian Drosophila.  Mol Phylogenet Evol. 2005 Oct;37(1):73-82.

Borda, E and Siddall, M. E. 2004. Review of the  evolution of life history strategies and  phylogeny of the Hirudinida (Annelida:  Oligochaeta). Lauterbornia 52: 5-25.

Borda, E. and Siddall, M. E. 2004.  Arhynchobdellida (Annelida: Oligochaeta:  Hirudinida): Phylogenetic Relationships and  Evolution. Mol. Phylog. Evol. 30: 213-225.

Borkent, A. and D. Grimaldi. 2004.  The earliest fossil mosquito (Diptera: Culicidae) in mid-Cretaceous Burmese amber.  Annals of the Entomological Society of America 97: 882-888.

Bowen, G. J., P. L. Koch, Meng J., Ye J., and S.-Y. Ting. 2005. Age and Correlation of Fossiliferous Late Paleocene-Early Eocene Strata of the Erlian Basin, Inner Mongolia, China. American Museum Novitates 3474: 1-26.

Bowen, G. J., T, J. Bralower, M. L. Delaney, G. R. Dickens, D. C. Kelly, P. L. Koch, L. R. Kump, J. Meng, L. C. Sloan, E. Thomas, S. L. Wing, J. C. Zachos. 2006. Eocene hyperthermal event offers insight into greenhouse warming. Eos, Vol. 87, No. 17.

Braun, C.B. and T. Grande.  2007.  Evolution of Peripheral Mechanisms for the Enhancement of Sound Reception.  In Popper, A.N., Fay, R.R, and Webb, J. (Eds).  Fish Bioacoustics.  Springer Handbook of Auditory Research (SHAR) volume  24.  in press.

Braun, C.B.  2007.  Evolution of mechanosensory and electrosensory lateral line systems.  Springer Encyclopedia of Neuroscience.  A. Butler, section editor.  in press.

Buckley, P.A. and S.S. Mitra. 2003 Williamson's Sapsucker, Cordilleran Flycatcher, and other long-distance vagrants at a Long Island, New York stopover site.  North American Birds 57: 292-304.

Buckley, P.A., S.S. Mitra, and E.S. Brinkley. 2004 Multiple occurrences of 'Dark-bellied Brant' (Branta (bernicla) bernicla) in North America. North American Birds 58: 180-185.

Budinoff RB Siddall AM and Siddall ME 2004.  Twelve variable microsatellite loci for the North  American medicinal leech, Macrobdella decora. Mol  Ecol Notes 4: 491-493

Buesseler K., Benitez-Nelson C., Moran S. B., Burd A., Charette M., Cochran J.K., Coppola L., Fisher N., Fowler S., Gardner W., Guo L., Gustafsson O., Lamborg C., Masque P., Miquel J-C., Passow U., Santschi P., Savoye N., Stewart G., Trull T.  2006.  An assessment of particulate organic carbon to thorium-234 ratios in the ocean and their impact on the application of 234Th as a POC proxy. Marine Chemistry 100: 213-233.

Burbrink, F. T. 2005 Inferring the Phylogenetic Position of Boa constrictor among the Boinae. Molecular Phylogenetics and Evolution 34:167-180.

Burbrink, F. T. and R. Lawson. 2007.  How and when did the Old World Rat Snakes  Cross Into the New World?  Molecular Phylognetics and Evolution. 43:173-189

Burbrink, F. T., B. I. Crother and R. Lawson. 2007. The destabilization of North  American Snake Taxonomy. Herpetological Review 38: 273-278.

Burbrink, F T., J. Rodriguez, and T. Castoe. 2008.  Molecular Snake  Phylogeography. Book Chapter in the forthcoming book: Snakes: Ecology  and  Conservation. Seigel and Mullin (Eds.)

Burbrink, F. T., F. Fontanella, A. Pyron, T. J. Guiher, and C. Jimenez. 2008.  Phylogeography across a continent: the evolutionary and demographic history of  the North Amerrican Racer (Serpentes: Colubridae: Coluber constrictor).   Molecular Phylogenetics and Evolution (in press).

Burke, RL, S. R. Goldberg, C. R. Bursey, S. L. Perkins, and P. T. Andreadis.  Depauperate parasite fauna in introduced populations of Podarcis (Squamata: Lacertidae) lizards in North America. Journal of Herpetology.  In press.

Burmeister, KC, J.J. Flynn, J.M. Parrish, and A.R. Wyss. 2006.   Paleogeographic and biostratigraphic implications of new early Mesozoic terrestrial vertebrate fossils from Poamay, central Morondava Basin, Madagascar.  Bulletin of the New Mexico Museum of Natural History, v. 37, p. 457-475 (special volume: The Triassic-Jurassic Terrestrial Transition, J.D. Harris, S.G. Lucas, J.A. Spielmann, M.G. Lockley, A.R.C. Milner, and J.I. Kirkland [eds.]).

Bryson R. W. Jr., J. Pastorini, F. T. Burbrink, and M. R.J. Forstner. 2007. A  phylogeny of the Lampropeltis mexicana complex (Serpentes: Colubridae)  based on mitochondrial DNA sequences suggests evidence for species-level  polyphyly within Lampropeltis. Molecular Phylognetics and Evolution.  43:674-684.  Burk RD, DeSalle R. 2006. The Tango and Tangle of Human Papillomavirus and the Human Genome. J  Natl Cancer Inst 98:1026-1027

Bybee, R. and J. Cracraft.  2005.  Educating a new generation about evolutionary science and society.  Pp. 201-202 in Evolutionary Science and Society: Educating  a New Generation (J. Cracraft and R. Bybee, eds.).  Biological Sciences Curriculum Study, Colorado Springs, CO.

Cain, D.J., Luoma, S.N., Wallace, W.G. 2004. Inter-specific tissue concentrations and subcellular partitioning of Cd, Cu, and Zn as a basis for understanding metal sensitivity in stream insects. Environ. Toxicol. Chem.  23(6): 1463-1473

Calcagnotto, D, Schaefer, A and DeSalle, R. 2005.   Relationships among characiform fishes inferred from analysis of nuclear and mitochondrial gene sequences.   Molecular Phylogenetics and Evolution 36:  135-153.

Carpenter, J. M. and P. L. T. Nguyen. 2003. Keys to the genera of social wasps of South-East Asia. Entomological Science 6: 183-192.

Carpenter, J. M. and E. P. Perera. 2006. Phylogenetic relationships among yellowjackets and the evolution of social parasitism. American Museum Novitates 3507: 1-19.

Casjens, S., Huang, W., Gilcrease, E., Qiu, W. G., McCaig, W., Luft, B., Schutzer, S., and Fraser, C. 2006. Comparative genomics of Borrelia burgdorferi. In:  The Molecular Biology of Spirochetes , Cabello, F., Hulinska, D., and Godfrey, H. (Eds.), IOS Press, Amsterdam, pp. 79-96.

Cassis, G., M.A. Wall, and R.T. Schuh. 2007.  Insect biodiversity and industrializing the taxonomic process: A case study with the Miridae (Heteroptera). In: Towards the Tree of Life: taxonomy and  systematics of large and species rich clades. (Trevor Hodkinson, and John Parnell, eds), pp. 193-212. CRC Press, Boca Raton.

Chaparro, JC, J. B. Pramuk, A. G. Gluesenkamp, and D.R. Frost.  2007.  Secondary homonymy of Bufo proboscideus Spix, 1824, with Phryniscus proboscideus Boulenger, 1882. Copeia, In press.

Charrier, R, A.N. Chávez, S. Elgueta, G. Hérail, J.J. Flynn, D.A. Croft, A.R. Wyss, and M. García.  2005.  Rapid tectonic and paleogeographic basin evolution associated with the development of the Chucal anticline and the Chucal-Lauca Basin in the Altiplano of Arica, northern Chile.  Journal of South American Earth Sciences (Special volume on Cenozoic Andean Basin Evolution, 5th ISAG), v. 19, p. 35-54.

Charrier, R, M. Bustamante, D. Comte, S. Elgueta, J.J. Flynn, N. Iturra, N. Muñoz, M. Pardo, R. Thiele, and A.R. Wyss. 2005.   The Abanico extensional basin: Regional extension, chronology of tectonic inversion, and relation to shallow seismic activity and Andean uplift.  Neues Jahrbuch für Geologie und Paläontologie, Abh. 236 (1-2): 43-77.

Charleston, M. A., and S. L. Perkins.  2003. Lizards, malaria, and jungles in the Caribbean. In Tangled Trees: Phylogeny, Cospeciation and Coevolution (Page, R. D. M., ed.) Chicago: University of Chicago.

Charleston MA and S. L. Perkins.  2005.  Traversing the tangle: algorithms and applications for cophylogeny studies.  Journal of Biomedical Informatics.  39:62-71.

Chen Z, Terai M, Fu L, Herrero R, DeSalle R, and Burk RD.  2005.  Diversifying selection in human papillomavirus type 16 lineages based on complete genome analyses.  J Virol. 79:7014-23. 

Chiu JC, Lee EK, Egan MG, Sarkar IN, Coruzzi GM, DeSalle R. 2006. OrthologID: automation of genome-scale  ortholog identification within a parsimony framework.   Bioinformatics 22(6):699-707.

Cibois, A. and J. Cracraft.  2004.   Assessing the passerine “Tapestry”: phylogenetic relationships of the Muscicapoidea inferred from nuclear DNA sequences.   Mol.  Phylogen.  Evol.  32: 2006264-273.

Conway, K.W. & M.L.J. Stiassny. Phylogenetic diagnosis of the African cyprinid genus Clypeobarbus Fowler, with the rehabilitation of C. bomokandi  (Myers) and notes on included species. Ichthyological Research.  In press

Cooch, EG, G Gauthier and RF Rockwell.  2003.  Apparent differences in stochastic growth rates based on timing of census: a cautionary note.  Ecological Modeling 159:133-143.

Coombs, S. and C. B. Braun.  2003.  Information Processing by the Lateral Line System.  In: Sensory Processing of the Aquatic Environment (S.P. Collin and N.J. Marshall, eds.)  Springer-Verlag, N.Y.    122-138.

Coombs, S., Anderson, E., Grosenbaugh, M. and CB Braun.  2007.  The hydrodynamic footprint of a benthic, sedentary fish in unidirectional flow.  Journal of The Acoustical Society of America, in press.

Cordova, M.S. and C.B. Braun.  2007.  The use of anesthesia during evoked potential audiometry in goldfish (Carassius auratus)  Brain Research, 1153:  78-83.

Coronado, J. E.; Attie, O.; Epstein, S. L.; Qiu, W. G.; Lipke, P. N. 2006.  Composition-modified matrices improve identification of homologs of Saccharomyces cerevisiae low-complexity glycoporteins. Eukaryotic Cells. 5 (4): 628-637

Coronado, J. E.; Epstein, S. L.; Qiu, W. G.; Lipke, P. N. 2007. Discovery of recurrent sequence motifs in Saccharomyces cerevisiae cell wall proteins. MATCH Communications in Mathematical and in Computer Chemistry. 58: 281-299

Corthals A, Desalle R. 2005. An application of tissue and  DNA banking for genomics and conservation: the Ambrose  Monell Cryo-Collection (AMCC). Syst Biol 54(5):819-823.

Cracraft, J., F. Keith Barker, and A Cibois.  2003.  Avian higher-level phylogenetics and the Howard and Moore checklist of birds.  Pp. 16-21 in The Howard and Moore Complete Checklist of the birds of the world (E. C. Dickinson, ed.).  Christopher Helm (A & C Black Publ.), London.

Cracraft, J. 2004. The new creationism and its threat to science literacy and education.  BioScience 54:3

Cracraft, J., F. K. Barker, M. Braun, J. Harshman, G. J. Dyke, J. Feinstein, S. Stanley, A. Cibois, P. Schikler, P. Beresford, J. García-Moreno, M. D. Sorenson, T. Yuri, and D. P. Mindell. 2004. Phylogenetic relationships among modern birds (Neornithes): toward an avian tree of life.  Pp. 468-489 in Assembling the tree of life (J. Cracraft and M. J. Donoghue, eds.). Oxford Univ. Press, New York.

Cracraft, J. and M. J. Donoghue.  2004.  Assembling the tree of life: where we stand at the beginning of the 21st century.  Pp. 553-561 in Assembling the tree of life (J. Cracraft and M. J. Donoghue, eds.). Oxford Univ. Press, New York.

Cracraft, J.  2004.  A new AIBS for the age of biology.  BioScience 54:979.

Cracraft, J. and R. Bybee.  2005.  Evolutionary science and society: saving lives and promoting prosperity.  Pp. 1-3 in Evolutionary Science and Society: Educating  a New Generation (J. Cracraft and R. Bybee, eds.).  Biological Sciences Curriculum Study, Colorado Springs, CO.

Cracraft, J.  2005. An overview of the Tree of Life.  Pp. 43-51 in Evolutionary Science and Society: Educating  a New Generation (J. Cracraft and R. Bybee, eds.).  Biological Sciences Curriculum Study, Colorado Springs, CO.

Cracraft, J. 2005.  Phylogeny and evo-devo: characters, homology, and the historical analysis of the evolution of development.  Zoology 108:345-356.

Cracraft, J.  2006. Reconstructing change in biological systems: are there commonalities between evolutionary biology and the humanities?  Pp. 270-284 in Understanding Change: Models, Methodologies and Metaphors (A. Wimmer and R. Kössler, eds.).  Houndmills, UK, Palgrave Macmillan.

Croft, DA, M. Bond, J.J. Flynn, M. Reguero, and A.R. Wyss.  2003.  Large archaeohyracids (Typotheria, Notoungulata) from central Chile and Patagonia, including a revision of Archaeotypotherium.  Fieldiana (Geology), N.S., no. 49, p. 1-38 (plus pages i-v).

Croft, DA, J.P. Radic, E. Zurita, R. Charrier, J.J. Flynn, and A.R. Wyss.  2003.  A Miocene toxodontid (Mammalia: Notoungulata) from the sedimentary series of the Cura-Mallín Formation, Lonquimay, Chile.  Revista Geologica de Chile, vol. 30, no. 2, p. 285-298.

Croft, DA, J.J. Flynn, and A.R. Wyss.  2004.  Notoungulata and Litopterna from the Early Miocene Chucal Fauna, Northern Chile.  Fieldiana (Geology), N.S., no. 50 (publication 1528), p. 1-52 (plus i-iv).

Croft, DA, L.R. Heaney, J.J. Flynn, and A.P. Bautista. 2006.    A new extinct, diminutive Bubalus (Artiodactyla: Bovidae: Bovini) from Cebu Island, Philippines.  Journal of Mammalogy, v. 87, no. 5, p. 1037-1051.

de Carvalho, M. S. S., and Maisey, J. G. 2007.  The Genus Mawsonia (Sarcopterygii; Actinistia) from the Cretaceous of Brazil, with a description of new material from the  Sanfrancisco Basin, State of Minas Gerais, southeastern Brazil.  In Longbottom, A., Cavin, L., and Richter, M. (eds.),  Fishes and the break-up of Pangaea.  London, Geological Society of London, Special Publications Series.

de Carvalho, M. R., F. A. Bockmann, D. S. Amorim, C. R. F. Brandão, M. de Vivo, J. L. de Figueiredo, H. A. Britski, M. C. C. de Pinna, N. A. Menezes, F. P. L. Marques, N. Papavero, E. M. Cancello, J. V. Crisci, J. D. McEachran, R. C. Schelly, J. G. Lundberg, A. C. Gill, R. Britz, Q. D. Wheeler, M. L. J. Stiassny, L. R. Parenti, L. M. Page, W. C. Wheeler, J. Faivovich, R. P. Vari10, L. Grande, C. J. Humphries, R. DeSalle, M. C. Ebach, and G. J. Nelson. 2007. Taxonomic Impediment or Impediment to Taxonomy? A Commentary on Systematics and the Cybertaxonomic-Automation Paradigm. Evolutionary Biology, in press.

Delson, E, H Thomas, and N Spassov.  2005.  Fossil Old World monkeys (Primates: Cercopithecidae) from the Pliocene of Dorkovo, Bulgaria. Geodiversitas 27: 159-166.

Delson, E and K Harvati.  2005.  Return of the last Neanderthal. Nature (News & Views), 443: 752-753.

Delson, E., Faure, M., Guérin, C., Aprile, A., Argant, J., Blackwell, B., Debard, E., Harcourt-Smith, W., Martin-Suarez, E., Monguillon, A., Parenti, F., Pastre, J.-F., Sen, S., Skinner, A.R., Swisher, C.C. III, and Valli, A.M.F.  2006.  Franco-American renewed research at the Late Villafranchian locality of Senèze (Haute-Loire, France). Courier Forschunginstitut Senckenberg  256: 275-290.

Dennehy, J.J. & Turner, P.E. 2004. Reduced fecundity is the cost of cheating in RNA virus Φ6. Proceedings of the Royal Society: Biological Sciences, 271: 2275-2282.

Dennehy, J.J. & Livdahl, T. 2004. Polymorphic foraging behavior among Caenorhabditis elegans. frequency- and density-dependent selection. Journal of Nematology, 36: 276-280.

Dennehy, J.J., Yang, Y., Friedenberg N. & Turner, P.E. 2006. Bacteriophage migration via nematode vectors:  host-parasite-consumer interactions in laboratory microcosms. Applied and Environmental Microbiology, 72: 1974-1979.

Dennehy, J.J., Friedenberg, N. Holt, R.D. & Turner, P.E. 2006. Viral ecology and the maintenance of novel host use. The American Naturalist, 167: 429-439.

Dennehy, J.J. & Abedon, S.T. Turner, P.E. 2007. Host density impacts relative fitness of bacteriophage φ6 genotypes in structured habitats. Evolution Published article online: 23-Aug-2007

Dennehy, J.J., Friedenberg N., Yang, Y. & Turner, P.E. 2007. Virus population extinction via ecological traps.  Ecology Letters, 10: 230–240.

DeSalle R, Branham MA, O'Grady P, Gatesy J., 2003.  The evolution of HOM-C homeoboxes in the Dipteran family Drosophilidae. Insect Mol Biol. 12: 345-51.

DeSalle, R Gregory, TR, and Johnston, JS.  2005.  Preparation of samples for comparative studies of arthropod chromosomes: visualization, in situ hybridization, and genome size estimation. Methods Enzymol. 395:460-88.

DeSalle R. Animal phylogenomics: multiple interspecific genome comparisons. 2005.  Methods Enzymol. 395:104-33.

DeSalle R, and Amato G. The expansion of conservation genetics. 2004.  Nat Rev Genet. 5:702-12.

DeSalle R, Egan MG, Siddall M.2005.  The unholy trinity: taxonomy, species delimitation and DNA barcoding. 2005.  Philos Trans R Soc Lond B Biol Sci. 2005 Oct 29;360(1462):1905-16.

DeSalle R.  2005.Genetics at the brink of extinction.  Heredity. 2005 Apr;94(4):386-7.

DeSalle R. 2005. Animal phylogenomics: multiple interspecific genome comparisons. Methods Enzymol 395:104-133.

DeSalle, R. and Egan M. Molecular paleontology.  2005.  pp299-306 in Encyclopedia of Molecular Biology and Molecular Medicine, Volume 4., ed. by R.A. Meyers.  VCH Publishers, New York.

DeSalle R. 2006. What's in a character? J Biomed Inform 39(1):6-17.

Devitt, T., B. I. Crother, A. Meier, F. T. Burbrink and J. J. Boundy. 2007. Pituophis  catenifer (Bullsnake) Maximum Length. Herpetolgical Review 38: 209

Donoghue, M. J. and J. Cracraft.  2004.  Introduction: Charting the Tree of Life.  Pp. 1-4 in Assembling the tree of life (J. Cracraft and M. J. Donoghue, eds.). Oxford Univ. Press, New York.

Doukakis, P, Birstein, VJ, DeSalle, R. 2005.  Intraspecific structure within three caviar-producing sturgeons (Acipenser gueldenstaedtii, A. stellatus, and Huso huso) based on mitochondrial DNA analysis. Journal of Applied Ichthyology 21: 457-460.

Druce, D., Hamer, M., Slotow, R. and Prendini, L. 2004. Checklist of millipedes (Diplopoda), centipedes (Chilopoda) and scorpions (Arachnida: Scorpionida) from a savanna ecosystem, Limpopo Province, South Africa. African Invertebrates 45: 315322.

Dubatolov, V., J. Kojima, J. M. Carpenter and A. Lvovsky. 2003. Subspecies of Vespa crabro in two different papers by Birula in 1925. Entomological Science 6: 215-216.

Dudgeon, D., A.H. Arthington, M.O. Gessner, Z. Kawabata, D.J. Knowler, C. Lévêque, R.J., Naiman, A.-H., Prieur-Richard, D. Soto, M.L.J. Stiassny & C.A. Sullivan. 2005 Freshwater biodiversity: importance, threats, status and conservation challenges. Biological Reviews 81:163-182.

Dunlop, J.A., Tetlie, O.E. and Prendini, L. (in press). Reinterpreting the Silurian scorpion Proscorpius osborni (Whitfield, 1885): Integrating data from Palaeozoic and Recent scorpions. Palaeontology.

Dunning, D.J., J.R. Waldman, Q.E. Ross, M.T. Mattson.  2006.  Dispersal of Age-2+ striped bass out of the Hudson River.  American Fisheries Society Symposium Series 51:287-294.

Dyer, L. A., Matlock, R. B., Chehrezad, D. and R. O’Malley. 2005. Predicting caterpillar parasitism in banana plantations. Environmental Entomology 34:403-409.

Elith, J., C. H. Graham, R. P. Anderson, M. Dudík, S. Ferrier, A. Guisan, R. J. Hijmans, F. Huettmann, J. R. Leathwick, A. Lehmann, J. Li, L. G. Lohmann, B. A. Loiselle, G. Manion, C. Moritz, M. Nakamura, Y. Nakazawa, J. M. Overton, A. T. Peterson, S. J. Phillips, K. Richardson, R. Scachetti-Pereira, R. E. Schapire, J. Soberón, S. Williams, M. S. Wisz, and N. E. Zimmerman. 2006. Novel methods improve prediction of species’ distributions from occurrence data. Ecography, 29:129–151.

Engel, M.S. and D. Grimaldi. 2004.  New light shed on the oldest insect.  Nature 427: 627-630.

Engel, M. S. and D. Grimaldi.  2004.  A new rock crawler in Baltic amber, with comments on the order (Mantophasmatodea: Mantophasmatidae).  American Museum Novitates 3431: 11 pp.

Engel, M.S. and D.A. Grimaldi. 2004.  A primitive earwig in Cretaceous amber from Myanmar (Dermaptera: Pygidicranidae).  Journal of Paleontology 78:  1018-1023.

Engel, M.S., and D. A. Grimaldi. 2004.  The first Mesozoic stephanid wasp (Hymenoptera: Stephanidae). Journal of Paleontology 78: 1192-1197.

Engel, M.S. and D. Grimaldi.  2005.  Primitive new ants in Cretaceous amber from Myanmar, New Jersey, and Canada (Hymenoptera: Formicidae).  American Museum Novitates 3485: 23 pp.

Engel, M.S. and D. Grimaldi.  2006. The first Cretaceous sclerogibbid wasp (Hymenoptera: Sclerogibbidae).  American Museum Novitates 3515:  1-7.

Engel, M. S. and D. Grimaldi. 2006.  The earliest webspinners (Insecta: Embiodea).  American Museum Novitates 3514: 1-15.

Engel, M.S. and D. Grimaldi. 2006.  Cretaceous Scolebythidae (Hymenoptera) and phylogeny of the family.  American Museum Novitates 3568:  1-21.

Engel, M. S. and D. A. Grimaldi.  2006.  The first Cretaceous spider wasp (Hymenoptera: Pompilidae).  Journal of the Kansas Entomological Society 79:  359-368.

Engel, M.S. and D. A. Grimaldi.  2006.  A diminutive pelecinid wasp in Cretaceous amber from New Jersey (Hymenoptera: Pelecinidae).  Northeastern Naturalist 13: 291-297.

Engel, M.S. and D. Grimaldi. 2006.  Miocene Neuropterida from Hispaniola.  American Museum Novitates, in press.

Engel, M.S., D. Grimaldi, and K. Krishna.  2007.  Termites from the Cretaceous of Asia.  Stutt. Beitr. Naturkunde C:  in press.

Engel, M.S., D. Grimaldi, and K. Krishna.  2007.  Synopsis of the termites in Baltic amber.  Stutt. Beitr. Naturkunde C:  in press.

Evans, M.E.K. and Dennehy, J.J. 2005. Germ Banking: Bet hedging and variable release from egg and seed dormancy. Quarterly Review of Biology, 80: 431-451.

Eyles, A. C. and R. T. Schuh.  2003.  Revision of New Zealand Bryocorinae and Phylinae (Insecta: Hemiptera: Miridae).  New Zealand Journal of Zoology  30:  263—325.

Falkowski, P. G., M. E. Katz, A. J. Milligan, K. Fennel, B. S. Cramer, M. P. Aubry, R. A. Berner, M. J. Novacek, and W. M. Zapol. The Rise of oxygen over the past 205 million years and the evolution of large placental mammals. Science 309:2202-2204.

Faure, M, C Guérin & E Delson. 2004.  Le gisement villafranchien de Senèze à Domeyrat (Haute-Loire). IN (J.F. Pastre, ed.) Quaternaire et volcanisme en Auvergne et Velay. Livret-guide de l'excursion de l'Association française pour l'étude du Quaternaire (mai, 2004), pp. 114-122.

Favovich, J., P. C. A. Garcia, F. Ananias, L. Lanari, N. G. Basso, and W.C. Wheeler. 2004. A molecular perspective on the phylogeny of the Hyla pulchella species group (Anura: Hylidae). Mol. Phyl. Evol, 32:938-950.

Faivovich, J, C. Haddad, P. Garcia, D. Frost, J. Campbell, and W. Wheeler.  2005.  Systematic review of the frog family Hylidae, with special reference to the Hylinae: phylogenetic analysis and taxonomic revision. Bulletin of the American Museum of Natural History 294: 1–240.

Feinstein, J. F. and J. Cracraft.  2004.  Solving a sequencing problem in the vertebrate mitochondrial control region using phylogenetic comparisons.  DNA Sequence 15:374-377.

Feinstein J, Purzycki KL, Mori SA, Hequet V, Berkov A.  Neotropical soldier flies (Stratiomyidae) reared from Lecythis poiteaui in French Guiana: do bat-pollinated flowers attract saprophiles? Journal of the Torrey Botanical Society. In press

Feinstein J, Mori SA, Berkov A. 2007. Saproflorivory: A diverse insect community in fallen flowers of Lecythidaceae in French Guiana. Biotropica 39: 549-554.

Fernández, L., and S.A. Schaefer. 2003. Trichomycterus yuska, a new species from high elevations of Argentina (Siluriformes: Trichomycteridae). Ichthyological Exploration of Freshwaters, 14(4):353-360.

Fernández, L., and S.A. Schaefer. 2005. New Trichomycterus (Siluriformes: Trichomycteridae) from an offshore island of Colombia. Copeia, 2005(1):68-76.

Fernández, L., L. J. Saucedo, F. M. Carvajal-Vallejos, and S. A. Schaefer.  A new phreatic catfish of the genus Phreatobius Goeldi 1905 from groundwaters of the Iténez River, Bolivia (Siluriformes, Heptapteridae). Zootaxa, 16 ms p., 3 figs. in press

Finarelli JA and J.J. Flynn. 2006.   Ancestral state reconstruction of body size in the Caniformia (Carnivora, Mammalia): The effects of incorporating data from the fossil record.  Systematic Biology, v. 55, no. 2, p. 301-313.

Finarelli, JA and J.J. Flynn. 2007.   The evolution of encephalization in caniform carnivorans. Evolution, v. 61(7), p. 1758-1772

Fjerdingstad, E.J., P.J. Gertsch, and L. Keller. 2003. The relationship between multiple mating by queens, within-colony genetic variability and fitness in the ant Lasius niger. Journal of Evolutionary Biology 16:844-853.

Fjerdingstad, E.J., and L. Keller. 2004. Relationships between phenotype, mating behaviour, and fitness of queens in the ant Lasius niger. Evolution 58: 1056-1063.

Fjerdingstad, E.J. 2004. Multiple-paternity and colony homeostasis in Lasius niger ants. Behavioral Ecology and Sociobiology 56:50-58.

Fjerdingstad, E.J. 2005. Control of body size of Lasius niger ant sexuals – worker interests, genes and environment. Molecular Ecology 14: 3123-3132.

Fjerdingstad, E.J., and R.H. Crozier. 2006. The evolution of worker caste diversity in social insects.  American Naturalist 167: 390-400.

Fjerdingstad, E.J., N. Schtickzelle, P. Manhes, A. Gutierrez, and J. Clobert. 2007. Evolution of dispersal and life history strategies – Tetrahymena ciliates. BMC Evolutionary Biology. In press.

Fleck, D.W. and R.S. Voss.  2007.  On the origin and cultural significance of unusually large synonym sets in some Panoan languages of northwest Amazonia.  Anthropological Linguistics 48: 335-368.

Flynn, JJ, A.R. Wyss, D.A. Croft, and R. Charrier.  2003.  The Tinguiririca Fauna, Chile: Biochronology, paleoecology, biogeography, and a new earliest Oligocene South American Land Mammal “Age”.  Palaeogeography, Palaeoclimatology, Palaeoecology, v. 195, no. 3/4, p. 229-259.

Flynn JJ and A.R. Wyss.  2003.  "Mesozoic terrestrial vertebrate faunas: The early history of Madagascar's vertebrate diversity.  IN: Goodman, S.M. and Benstead, J. (eds.), The Natural History of Madagscar, University of Chicago Press, Chicago, p. 34-40 (plus references in composite Geology and Soils  reference list on p. 67-74).

Flynn, JJ and A.R. Wyss.  2004.  A polydolopine marsupial skull from the Cachapoal Valley, Andean Main Range, Chile.  Bulletin of the American Museum of Natural History (“Tributes to Malcolm C. McKenna: His students, his legacy” [Festscrift], edited by G. Gould and S.K. Bell, Chap. 6), v. 285, p. 80-92.

Flynn, JJ and G.D. Wesley-Hunt.  2005.  Carnivora. pp. 175-198.  In The Rise of Placental Mammals: Origins and Relationships of the Major Extant Clades, D. Archibald and K. Rose (eds.).  Johns Hopkins University Press, Baltimore (published 3/18/05).

Flynn, JJ, B.J. Kowallis, C. Nuñez, O. Carranza-Castañeda, W.E. Miller, C.C. Swisher III, and E. Lindsay. 2005.   Geochronology of Hemphillian-Blancan aged strata, Guanajuato, Mexico, and implications for timing of the Great American Biotic Interchange.  Journal of Geology, v. 113, no. 3, p. 287-307.

Flynn, JJ, J.A. Finarelli, S.M. Zehr, J. Hsu, and M.A. Nedbal. 2005.   Molecular phylogeny of the Carnivora (Mammalia): Assessing the impact of increased sampling on resolving enigmatic relationships.  Systematic Biology, v. 54, no. 2, p. 1-21.

Flynn, JJ, D.A. Croft, R. Charrier, A.R. Wyss, G. Hérail, and M. García. 2005.   New Mesotheriidae (Mammalia, Notoungulata, Typotheria), geochronology, and tectonics of the Caragua Area, northernmost Chile.   Journal of South American Earth Sciences (Special volume on Cenozoic Andean Basin Evolution, 5th ISAG), v. 19, p. 55-74.

Flynn, JJ, S. Fox, J.M. Parrish, L. Ranivoharimana, and A.R. Wyss. 2006.   Assessing diversity and paleoecology of a Middle Jurassic microvertebrate assemblage from Madagascar.  Bulletin of the New Mexico Museum of Natural History, v. 37, p. 476-489 (special volume: The Triassic-Jurassic Terrestrial Transition, J.D. Harris, S.G. Lucas, J.A. Spielmann, M.G. Lockley, A.R.C. Milner, and J.I. Kirkland [eds.]).

Fontanella, F. F, C. R. Feldman, M. E. Siddall, and F. T. Burbrink. 2008.  Phylogeography of Diadophis punctatus: extensive lineage diversity and  repeated patterns of historical demography in a trans-continental snake.  Molecular Phylogenetics and Evolution (in Press).

Francke, O.F. and Prendini, L. Phylogeny and classification of the giant hairy scorpions, Hadrurus Thorell (Iuridae Thorell): A reappraisal. Systematics and Biodiversity. (in press).

Frank, A. T., N. S. Farina, N. Sawwan, O. R. Wauchope, M. Qi, E. M. Brzostowska, F. W. Grasso,  P. Haberfield and A Greer.  2007.  “Evidence for, and a possible explanation of an even over odd preference in natural macrocycle ring sizes.” Natural Products Research, in press.

Fraser, N. C. and D. A. Grimaldi. 2003.  Late Triassic continental faunal change:  new perspectives on Triassic insect diversity as revealed by a locality in the Danville Basin, Virginia, Newark Supergroup.  Pp. 192-205 In:  P. M. LeTourneau and P. E. Olsen (eds.), The Great Rift Valleys of Pangea in Eastern North America.  New York: Columbia University Press.

Frost D. and M. Lannoo.  2005.  Siren “texana”. p. 914 In M. Lannoo (ed.), Amphibian Declines: The Conservation Status of United Sates Species. University of California Press.

Frost, DR, T. Grant, and J. Mendelson.  2006.  Ollotis Cope, 1875, is the oldest name for the genus currently referred to as Cranopsis Cope, 1875 (Anura: Hyloides: Bufonidae). Copeia 2006(3): 558 

Frost, D, T. Grant, J. Faivovich, R. Bain, A. Haas, C. Haddad, R. de Sa, A. Channing,  M. Wilkinson, S. Donnellan, C. Raxworthy, B. Blotto, P. Moler, R. Drewes, R. Nussbaum,  J. Lynch, D. Green, and W. Wheeler.  2006.  The amphibian tree of life. Bulletin of the American Museum of Natural History 297: 1–370.

Frost DR, T. Grant, J. Faivovich, R.H. Bain, A. Haas, C.F.B. Haddad, R.O. de Sa, A. Channing, M. Wilkinson, S.C. Donnellan, C.J. Raxworthy, J.A. Campbell, B.L. Blotto, P. Moler, R.C. Drewes, R.A. Nussbaum, J.D. Lynch, D.M. Green, and W.C. Wheeler.  2007.  Is the Amphibian Tree of Life really flawed? Cladistics, In press

Frost, SR, LF Marcus, D Reddy, F Bookstein and E. Delson.  2003.  Cranial allometry, phylogeography and systematics of large bodied papionins (Primates: Cercopithecinae) inferred from geometric morphometric analysis of landmark data. Anatomical Record 275A: 1048-1072.

Furano, AV, D. Duvernell and S. Boissinot. 2004. L1 (LINE-1) retrotransposon diversity differs dramatically between mammals and fish. Trends in Genetics 20(1): 9-14.

Gayen, T. K., Katz, A., Savage, H. E., Lee, J., Paul, M. Halder, R. K.,McCormick, S.A. and Alfano, R. R. 2003.  Near-infrared laser welding of aortic and skin tissues and microscopic investigation of welding efficacy. Lasers in Surgery: Advanced characterization, therapeutics, and systems XIII. SPIE 4949:182-185

Gatesy J, Amato G, Norell M, DeSalle R, Hayashi C.  2003.  Combined support for wholesale taxic atavism in gavialine crocodylians. Syst Biol. 5: 403-22. Erratum in: Syst Biol 52: 734.

Getahun, A., Stiassny, M.L.J. & G.G. Teugels. 2004. Description of a new species of Varicorhinus  (Ostariophysi: Cyprinidae) from West-Central Africa. Cybium 28(2): 159-162.

Giannini, N. P., and N. B. Simmons.  2003. A phylogeny of megachiropteran bats (Mammalia: Chiroptera: Pteropodidae) based on direct optimization analysis of one nuclear and four mitochondrial genes.  Cladistics 19: 496-511.

Giannini, N. P., and N. B. Simmons.  2005.  Conflict and congruence in a combined DNA-morphology analysis of megachiropteran bat relationships (Mammalia: Chiroptera: Pteropodidae).  Cladistics 21: 411-437.

Giannini, N. P., and N. B. Simmons.  2007  The chiropteran premaxilla:  a reanalysis of morphological variation and its phylogenetic interpretation.  American Museum Novitates 3585: 1-44.

Giannini, N. P., and N. B. Simmons.  2007.  Element homology and the evolution of dental formulae megachiropteran bats (Mammalia: Chiroptera: Pteropodidae).  American Museum Novitates 3559: 1-22.

Giannini, N. P., F. C. Almeida, N. B. Simmons, and R. DeSalle.  2006.  Phylogenetic relationships of the enigmatic Harpy Fruit Bat, Harpyionycteris (Mammalia: Chiroptera: Pteropodidae).  American Museum Novitates 3533: 1-12.

Giannini, N. P., J. R. Wible, and N. B. Simmons.  2006.  On the cranial Osteology of Chiroptera. I. Pteropus (Megachiroptera: Pteropodidae).  Bulletin of the American Museum of Natural History 295: 1-134.

Gibbs, J.P., C. Marquez and E.J. Sterling. The role of endangered species reintroduction in ecosystem restoration: Tortoise-cactus interactions on Española Island, Galápagos. Restoration Ecology.  in press.

Giribet G, Richter, S., Edgecombe G. D, and Wheeler W.C. 2005. “The position of crustaceans within the Arthopoda—evidence from nine molecular loci and morphology.” Pp307-352 in Crustacea and Arthropod Relationships, S. Koenemann and R. A. Jenner eds. Taylor and Franscis, Boca Raton.

Ginsberg, H.S., E. Zhioua, S. S. Mitra, J. Fischer, P. A. Buckley, F. Verrett, H. B. Underwood, and F. G. Buckley.  2004 Woodland type and spatial distribution of nymphal  Ixodes scapularis (Acari: Ixodidae). Environmental Entomology 33: 1266-1273.

Ginsberg, H. S., M. G. Balmforth, E. Zhioua, P. A. Buckley, S. S. Mitra, and F. G. Buckley. 2005 Reservoir competence of native North American birds for the Lyme disease spirochete, Borrelia burgdorferi.  Journal of Medical Entomology 42: 445-449.

Giribet G, Edgecombe G. D., Carpenter J.M., d‘Haese C., Wheeler W.C. 2004. Is Ellipura monophyletic? A combined analysis of basal hexapod relationships with emphasis on the origin of insects. Organisms, Diversity, and Evolution, 4:319-340.

Giribet, G, and W. C. Wheeler. 2007. The case for sensitivity: a response to Grant and Kluge. Cladistics 23:294-296.

Gleason, J. S., C. D. Ankney, J. O. Leafloor and K. F. Abraham. 2004. Variation in reproductive performance of Canada geese in the presence and absence of lesser snow geese. Page 75-83 in T.J. Moser, R.D. Lien, K.C. VerCauteren, K.F. Abraham, D.E. Andersen, J.G. Bruggink, J.M. Coluccy, D.A. Graber, J.O. Leafloor, D.R. Luukkonen, and R.E. Trost, editors. Proceedings of the 2003 International Canada Goose Symposium, Madison, Wisconsin, USA.

Goldstein PZ and DeSalle R.  2003.  Calibrating phylogenetic species formation in a threatened insect using DNA from historical specimens.   Mol Ecol. 12: 1993-8.

Goldstein, P, Wyner, W, Doukakis, P, Egan, MG, Amato, G, Rosenbaum, H, and DeSalle, R. 2005.  Theory and methods for diagnosing species and populations in conservation. Annals of the Missouri Botanical Gardens 92: 12-27.

Gómez-Laverde, M., R. P. Anderson, and L. F. García. 2004. Integrated systematic reevaluation of the Amazonian genus Scolomys (Rodentia: Sigmodontinae). Mammalian Biology, 69:119–139.

Goplan, V. , Qiu, W. G.; Chen, M. Z.; Stolzfus, A. 2006.  Nexplorer: Phylogeny-based exploration of sequence family data.  Bioinformatics. 22: 120-121

Gordon,, N., Shpigel, M, Harpaz, S, Lee, J. J. and Neori, A. 2004 The settlement of abalone (Haliotis discus hannai) larvae on culture layers of different diatoms.  J. Shellfish Research  23: 561-568.

Gordon,, N., Neori, A., Shpigel, M, Lee, J. J. and Harpaz, S . 2006  Effect of diatom diets  diatom on the growth and survival of the abalone Haliotis discus hannaii post-larvae. Aquaculture 252: 225-233

Goswami, A, J.J. Flynn, L. Ranivoharimanana, and A.R. Wyss. 2005.   Dental microwear in Triassic amniotes: Implications for paleoecology and masticatory mechanics.  Journal of Vertebrate Paleontology, v. 25, no. 2, p. 320-329.

Goto, D., Wallace, W.G. 2007. Interaction of Cd and Zn during uptake and loss in the polychaete Capitella capitata: whole body and subcellular perspectives. Mar. Environ. Res. (in press)

Graham T and S. Boissinot. 2006. The genomic distribution of L1 elements: the role of insertion bias and natural selection. Journal of Biomedicine and Biotechnology 2006: 1-5.

Grant, T., D.R. Frost, J.P. Caldwell, R. Gagliardo, C.F.B. Haddad, P.J.R. Kok, B.D. Means, B.P. Noonan, W. Schargel, and W.C. Wheeler. 2006. Phylogenetic systematics of dart-poison frogs and their relatives (Anura: Athesphatanura: Dendrobatidae). Bulletin of the American Museum of Natural History 299:184-203.

Grant, T, D. Frost, J. Caldwell, R. Gagliardo, C. F. B. Haddad, P. Kok, D. B. Means, B. P. Noonan, W. E. Schargel, and W. C. Wheeler.  2006.  Phylogenetic systematics of dart-poison frogs and their relatives (Amphibia: Athesphatanura: Dendrobatidae). Bulletin of the American Museum of Natural History 299: 1–268.

Grant, T, R. Ibañez D, D. Frost, C.W. Myers, and J.M. Savage.  2006.  Hyloxalus panamensis Dunn, 1933: proposed emendation of spelling from Hyloxalus panamansis (currently Colostethus panamansis; Amphibia, Anura). Bulletin of Zoological Nomenclature 63(1): 39–41.

Grasso, F. W.  2007.  “Inspiration, Simulation and Design for Smart Robot Manipulators from the Sucker Actuation Mechanism of Cephalopods.” Bioinspiration and Biomimetics, in Press.

Grasso, F. W.  2007.  “Octopus Sucker-Arm Coordination in Grasping and Manipulation.” American Malacological Bulletin, in press.

Grazia, J, R. T. Schuh. and W. C. Wheeler. Phylogenetic relationships of family groups in Pentatomoidea based on morphology and DNA sequences (Insecta: Heteroptera). Cladisitcs, in press.

Greisman, L. and Moller, P. 2004. The anal-fin complex in a weakly discharging electric fish, Gnathonemus petersii Günther 1862 (Teleostei: Mormyridae). J. Biol. Fish. 66, 266-275.

Griffiths, C. S., G. F. Barrowclough, J. G. Groth, and L. Mertz.  2004.  Phylogeny of the Falconidae (Aves): a comparison of the efficacy of morphological, mitochondrial, and nuclear data.  Molecular Phylogenetics & Evolution 32:101-109.

Grimaldi, D. 2003.  “Fossil Record,” pp. 455-463 In: Encyclopedia of Insects, V.H. Resh and R. Cardé (eds.), Academic Press, New York.

Grimaldi, D. 2003.  “Coevolution” (pgs. 235-237), “Pollination” (pgs. 574-577), and “Terrestrial Arthropods” (pgs. 149-157), in Life on Earth: An Encyclopedia of Biodiversity, Ecology, and Evolution.  Santa Barbara: ABC CLIO.

Grimaldi, D. 2003.  A revision of Cretaceous mantises and their relationships, including new taxa (Insecta: Dictyoptera).  American  Museum Novitates 3412: 1-47. 

Grimaldi, D., F. Ervik, and R. Bernal.  2003.  Two new Neotropical genera of Drosophilidae (Diptera) visiting palm flowers.  Journal of the Kansas Entomological Society 76: 109-124 [Festschrift volume in honor of Jerome G. Rozen].

Grimaldi, D. 2003.  First amber fossils of the extinct family Protopsyllidiidae, and their phylogenetic significance among Hemiptera.  Insect Systematics and Evolution 34: 329-344.

Grimaldi, D., A. Shmakov, and N. Fraser.  2004.  Mesozoic thrips and early evolution of the order Thysanoptera (Insecta).  Journal of Paleontology 78: 941-952.

Grimaldi, D. and M. S. Engel.  2005.  Evolution of the Insects.  New York/Cambridge: Cambridge University Press.  xv + 755 pp.

Grimaldi, D.,  J. Kathirithamby, and V. Schawaroch. 2005. Strepsiptera and triungula in Cretaceous amber.  Insect Systematics and Evolution 36: 1-20.

Grimaldi, D., A. Rasnitsyn, and N. Fraser. 2005.  New and revised scorpionflies of the extinct family Pseudopolycentropodidae (Mecoptera), including two mosquito-like species in Cretaceous amber.  Insect Systematics and Evolution, in press.

Grimaldi, D. and M. S. Engel.  2005.  Fossil Liposcelididae and the lice ages (Insecta: Psocodea).  Proceedings of the Royal Society of London (B), Biological Sciences 273: 625-633.

Grimaldi, D. and M.S. Engel.  2006.  Extralimital fossils of the "Gondwanan" family Sphaeropsocidae (Psocodea). American Museum Novitates 3523: 1-18.

Ginter, M. and Maisey, J. G.  2007.  The braincase and jaws of Cladodus from the Lower Carboniferous of Scotland.  Palaeontology 50 (2): 305-322.

Grismado, Cristian J., Lara Lopardo, and Norman Platnick. 2003. A new species of Austrochilus from Chile (Araneae, Austrochilidae, Austrochilinae).  Journal of Arachnology 31: 148-150.

Griswold, Charles E., Martín J. Ramírez, Jonathan A. Coddington, and Norman Platnick. 2005. Atlas of phylogenetic data for entelegyne spiders (Araneae: Araneomorphae: Entelegynae) with comments on their phylogeny.  Proceedings California Academy Sciences, ser. 4, vol. 56, suppl. II, pp. 1-324, plates 1-220.

Gruber, K.F., R.S. Voss, and S.A. Jansa.  2007.  Base-compositional heterogeneity in the RAG1 locus among didelphid marsupials: implications for phylogenetic inference and the evolution of GC content.  Systematic Biology 56: 83-96.

Grunbaum, D. and R.R. Veit.  2003. Foraging behavior of Black-browed Albatrosses exploiting Antarctic krill: Density-dependence through local enhancement.  Ecology 84(12): 3265-3275.

Grunwald, C., L. Maceda, J. Waldman, J. Stabile, and I. Wirgin.  2008.  Conservation of Atlantic sturgeon Acipenser oxyrinchus oxyrinchus: delineation of stock structure and distinct population segments.  Conservation Genetics.  In press.

Gu J, Gu X.  2003.  Induced gene expression in human brain after the split from chimpanzee. Trends in Genetics. 19: 63-65.

Gu J.  2003.  Functional divergence and genome evolution of vertebrate protein kinases (kinome). Dissertation. Iowa State University.

Gu J, Gu X.  2003.  Natural history and functional divergence in protein tyrosine kinases. Gene. 317: 49-57.

Gu J, Gu X.  2004.  Further statistical analysis for genome-wide expression evolution in primate brain/liver/fibroblast tissues. Human Genomics. 1(4): 247-254.

Gu X, Wang Y, Gu J, Velden KV, Xu, D.  2006.  Predicting Type-I (Rate-Shift) Functional Divergence of Protein Sequences and Applications in Functional Genomics. Current Genomics 7(2): 87-96.

Gu J, Li WH.  2006.  Are GC-rich isochores vanishing in mammals? Gene. 385: 50-56.

Gu J, Neary JL, Sanchez M, Yu J, Lilburn TG, Wang Y.  2007.  Genome Evolution and Functional Divergence in Yersinia. Journal of Experimental Zoology: Molecular and Developmental Evolution. 308(1): 37-49.

Gu J, Neary JL, Moshfeghian A, Wang Y.  2007.  Lineage Specific Expansion in Vibrio Species. In: Proceeding of The 2007 International Conference on Bioinformatics & Computational Biology. (In press)

Guérin, C, M Faure, A Argant, J Argant, E Crégut-Bonnoure, E Debard, E Delson, V Eisenmann, M Hugueney, N Limondin-Lozouet, E Martin-Suarez, P Mein, C Mourer-Chauvire, F Parenti, J-F Pastre, S Sen and A Valli.  2004.  Le gisement pliocène supérieur de Saint-Vallier (Drôme, France): synthèse biostratigraphique et paléoécologique. Géobios 37: S349-S360.

Gunnell, G. F., and Simmons, N. B.  2005.  Fossil evidence and the origin of bats.  Journal of Mammalian Evolution, 12: 209-246.

Guralnick, R. P., E. Hall, and S. L. Perkins.  2004.  A comparative approach to understanding causes and consequences of mollusc-digenean size relationships:  A case study with Allocreadiid trematodes and Cyclocalyx clams.  Journal of Parasitology  90:1253-1262.

Hacker J, Hansen J, Berner J, Chen YQ, Eshel G, Hakim G, Lazarus S, Majumdar S, Morss R, Poje A, Sheremet V, Tang YM, Webb C.  2005.  Predictability, Bulletin of the American Meteorological Society, 86, p1733-1737.

Hadrys T, DeSalle R, Sagasser S, Fischer N, Schierwater B.2005.  The Trichoplax PaxB gene: a putative Proto-PaxA/B/C gene predating the origin of nerve and sensory cells. Mol Biol Evol. 2005 Jul;22(7):1569-78.

Hawkins, E. K. Lee, J. J. and Correia, MS. 2003 Polar localization of filamentous actin in cells of the scale-forming alga  Pleurochrysis sp. Protoplasma 220:233-236.

Haza, AC, A. Gria, P. Martin, A. Molcard, T.M. Ozgokmen, A.C. Poje, R. Barbanti, J.W. Book, P.M. Poulain, M. Rixsen, P. Zanasca.  2007.  Model-based directed drifter launches in the Adriatic Sea: Results from the DART experiment. A.C., Geophysical Research Letters, 34, L10605.

Helfenbein KG, and DeSalle R.  2005.  Falsifications and corroborations: Karl Popper's influence on systematics.  Mol Phylogenet Evol. 35:271-80.

Herbst L, Ene A, Su M, DeSalle R, and Lenz J. 2004.  Tumor outbreaks in marine turtles are not due to recent herpesvirus mutations.  Curr Biol. 14:R697-9.

Hickerson, M.J., M. Gilchrist, and N. Takebayashi. 2003. Calibrating a molecular clock from Phylogeographic data:  moments and likelihood estimators.  Evolution 57:  2216-2225.

Hickerson M.J. and C. W. Cunningham. 2005. Contrasting Quaternary histories in an ecologically divergent pair of low-dispersing intertidal fish (Xiphister) revealed by multi-locus DNA analysis. Evolution 59: 344-360.

Hickerson, M.J., E, Stahl, and H.A. Lessios. 2006 Test for simultaneous divergence using approximate Bayesian computation.  Evolution 60: 2435-2453

Hickerson, M.J., C. W. Cunningham. 2006 Nearshore fish (Pholis gunnellus) persists across the North Atlantic through multiple glacial episodes. Molecular Ecology 15: 4095-4107

Hickerson, M.J., C. Meyer, and C. Moritz. 2006 DNA-Barcoding will often fail to Discover New Animal Species over Broad Parameter Space. Systematic Biology 55: 729-739

Hickerson, M.J., G. Dolman, and C. Moritz. 2006. Phylogeographic summary statistics for testing histories of co-distributed taxon-pairs. Molecular Ecology 15:  209-224.

Hickerson, M.J., E. Stahl, and N. Takebayashi. 2007 msBayes: A flexible pipeline for comparative phylogeographic inference using approximate Bayesian computation (ABC).  (in press; BMC Bioinformatics)

Hitz, RH, J.J. Flynn, and A.R. Wyss.  2006.  New basal Interatheriidae (Typotheria, Notoungulata, Mammalia) from the Paleogene of central Chile. American Museum Novitates, no. 3520, p. 1-32.

Hladish, T.; Gopalan, V.; Liang, C. Z.; Qiu, W. G.; Yang, P.; Stoltzfus, A. 2007. Bio::NEXUS: a Perl API for the NEXUS format for comparative biological data. BMC Bioinformatics. 8:191.

Holycross, AT, T.G. Anton, M.E. Douglas, D.R. Frost.   2007.  The type localities of Sistrurus catenatus and Crotalus viridis (Serpentes: Viperidae), with the unraveling of a most unfortunate tangle of names. Copeia, in press.

Hu, Y.-M., J. Meng, C.-K. Li, and Y.-Q. Wang. 2005. Large Mesozoic mammals fed on young dinosaurs. Nature 433: 149-152.

Hu, Y.-M., J. Meng, and J. M. Clark. 2007. A new Late Jurassic docodont (Mammalia) from northeastern Xinjiang, China. Vertebrata PalAsiatica 45: 173—194.

Hughes, J.L., and Siddall, M.E. 2007. A new  species of leech from the New York Metropolitan  Area. American Museum Novitates, in press.

Hyrenbach, K.D. and R.R. Veit. 2003. Ocean warming and seabird communities of the southern California Current System (1987-1998): responses at multiple temporal scales.  Deep-Sea Research II 50: 2537-2566.

Hyrenbach, K.D., RR Veit, H Weimerskirch and GL Hunt Jr.  2006.  Seabird associations with mesoscale eddies: the subtropical Indian Ocean.  Marine Ecology Progress Series 324: 271-279.

Hyrenbach, K.D., R.R. Veit, H. Weimerskirch, N. Metzl and G.L. Hunt, Jr.  2007.  Community structure across a large-scale ocean productivity gradient:  Marine bird assemblages of the Southern Indian Ocean.  Deep Sea Research I., in press.

Janies, A. W. Hill, E. Waltari, R. Guralnick, F. Habib, W. C. Wheeler. 2007. Genomic analysis and geographic visualization of the spread of avian influenza. Syst. Biol. 56:31-39.

Jansa, S.A., and R.S. Voss. 2005. Phylogenetic relationships of the marsupial genus Hyladelphys based on nuclear gene sequences and morphology. J. Mammal. 86: 853-865.

Jansa, S.A., J.F. Forsman, and R.S. Voss. 2006. Different patterns of selection on nuclear genes IRBP and DMP1 affect the efficiency but not the outcome of phylogeny estimation for didelphid marsupials. Mol. Phylogen. Evol. 38: 363-380.

Jefferies, R.L., R.F. Rockwell, and K.F. Abraham. 2003. The embarrassment of riches: agricultural food subsidies, high goose numbers and loss of Arctic wetlands – a continuing saga.  Environmental Reviews 11(4): 193-232. National Research Council of Canada, Ottawa ON.

Jefferies, R.L., H.A.L. Henry and K.F. Abraham. 2004. Agricultural nutrient subsidies to migratory geese and change to Arctic coastal habitats. Chapter 18, pages 268-283 in G.A. Polis, M.E. Power and G. R. Huxel (eds.) Food Webs at the Landscape Level, University of Chicago Press, Chicago, USA. 548 pp.

Jefferies, RL, RF Rockwell and KF Abraham. 2004. Agricultural food subsidies, migratory connectivity and large-scale disturbance in Arctic coastal systems: a case study. Integrative and Comparative Biology 44:130-139.

Jefferies, R. L., A. P. Jano and K. F. Abraham. 2006. A Biotic Agent Promotes Large-Scale Catastrophic Change in Coastal Marshes of Hudson Bay. J. Ecology. 94:234-242.

Jiang C, Gu J, Gu X, Chopra S, Peterson T.  2004.  Ordered origin of the typical two- and three-repeat Myb genes. Gene. 326: 13-22.

Jiang, Z, T. A. Castoe, C. C. Austin, F. T. Burbrink, M. D. Herron, J. A. McGuire,  C. L.  Parkinson, and D. D. Pollock.  2007. Comparative mitochondrial  genomics of snakes: extraordinary substitution rate dynamics and functionality of  the duplicate control region. BMC Evolutionary Biology 7:123.

Kamenz, C. and Prendini, L. An atlas of book lung ultrastructure in the Order Scorpiones (Arachnida). Bulletin of the American Museum of Natural History. In press

Kerbes, R. H., K. M. Meeres, R. T. Alisauskas, F. D. Caswell, K. F. Abraham, and R. K. Ross. 2006. Inventory of nesting Mid-Continent Lesser Snow and Ross’s Geese in Eastern and Central Arctic Canada, 1997-98. Canadian Wildlife Service Technical Report series, Winnipeg, MB. 54 pp.

Khan,H, A. Smit and S. Boissinot. 2006. The evolution of human LINE-1 retrotransposons since the origin of primates. Genome Research 16(1): 78-87.

Klaassen, M.E., K.F. Abraham, R.L.Jefferies, and Mark Vrtiska. 2006. Factors affecting the site of investment, and the reliance on savings for arctic breeders: the capital-income dichotomy revisited? Ardea 39: 371-384.

Klaus, A.V., V. Kulasekara and V. Schawaroch.  2003.  Three-dimensional visualization of insect morphology using confocal laser scanning microscopy. Journal of Microscopy, 212(2): 107-121.

Klaus, A.V. and Schawaroch, V.  2006.  Novel methodology utilizing confocal laser scanning microscopy for systematic analysis in arthropods (Insecta). Integrative and Comparative Biology, 46(2): 207-214.

Koons, DN, RF Rockwell and JB Grand.  2006.  Population momentum: implications for wildlife management.  Journal of Wildlife Management 70:19-26.

Kajumbula H, RG Wallace, J-C Zong, J Hokello, N Sussman, S Simms, RF Rockwell, R Pozos, GS Hayward and W Boto.  2006.  Ugandan KSHV phylogeny: evidence for cross-ethnic transmission of viral subtypes.  Intervirology 49:133–143.

Koons, DN, JB Grand, B Zinner and RF Rockwell.  2005.  Transient population dynamics: relations to life history and initial population state.  Ecological Modeling 185:283-297.

Krause, DW, P.M. O’Connor, A.H. Rasoamiaramanana, G.A. Buckley, D. Burney, M.T. Carrano, P.S. Chatrath, J.J. Flynn, C.A. Forster, L.R. Godfrey, W.L. Jungers, R.R. Rogers, K.E. Samonds, E.L. Simons, and A.R. Wyss. 2006.   Preserving Madagascar’s natural heritage: The importance of keeping the island’s vertebrate fossils in the public domain.  Madagascar Conservation & Development, v. 1, issue 1, p. 43-47.

Krishna, K., and D. Grimaldi.  2003.  The first Cretaceous Rhinotermitidae (Isoptera): A new species, genus, and subfamily in Burmese amber.  American Museum Novitates 3390: 10 pp.

Ladich, F., Collin, S.P., Moller, P. and Kapoor, B.G. (eds.) 2006. Communication in Fishes. Science Publishers Inc., Enfield, NH, USA

Lamboj, A. And M.L.J. Stiassny. 2003. Three new Parananochromis species (Teleostei, Cichlidae) from Gabon and Cameroon, Central Africa. Zootaxa 209: 1-19.

Lawson, R, J. Slowinski and F. Burbrink. 2004. A molecular approach to discerning  the phylogenetic placement of the enigmatic snake Xenophidion schaeferi   among the Alethinophidia. Journal of Zoology 263:1-10.

Lawson, R., J. Slowinski, B. I. Crother, and Frank Burbrink. 2005. Phylogeny of the  Colubroidea (Serpentes): New Evidence from Mitochondrial and Nuclear   genes.  Molecular Phylogenetics and Evolution 37:581-601.

Le Sy, V., A. Varon, and W. C. Wheeler. 2006. Pairwise alignment with rearrangement. Genome Informatics 17(2):141-151.

Le Sy, V., A. Varon, D. Janies, and W. C. Wheeler. 2007. Towards phylogenomic reconstruction. Proceedings of the 2007 International Conference on Bioinformatics and Computational Biology. Las Vegas Nevada, USA, pp. 98-104.

Leaché, A, S.A. Crews and M.J. Hickerson. 2007 Two waves of diversification in mammals and reptiles of Baja California revealed by hierarchical Bayesian analysis? (in press; Biology Letters).

Leafloor, J.O., K.F. Abraham, F.D. Caswell, K.E. Gamble, R.N. Helm, D.D. Humburg, J.S. Lawrence, D.R. Luukkonen, R.D. Pritchert, E.L. Warr, G.G. Zenner. 2004. Canada Goose Management in the Mississippi Flyway. Pages 22-36 in T.J. Moser, R.D. Lien, K.C. VerCauteren, K.F. Abraham, D.E. Andersen, J.G. Bruggink, J.M. Coluccy, D.A. Graber, J.O. Leafloor, D.R. Luukkonen, and R.E. Trost, editors. Proceedings of the 2003 International Canada Goose Symposium, Madison, Wisconsin, USA.

Lee J. J., Shpigel, M., Freeman, S., Zmora, O., McLeod, S., Bowen, S., Pearson, M and Szostek, A. 2003. Pysiological ecology and possible control strategy of a toxic marine dinoflagellate, Amphidinium sp., from the benthos of a mariculture pond.  Aquaculture  207:351-371

Lee, J. J., Olea, R., Cervasco, M., Ponchon, X., Correia, Shpigel, M., and  Pawlowski,  J. 2003.  A toxic marine dinoflagellate, Amphidinium eilatiana, from the benthos of a mariculture sedimentation pond in Eilat Israel.  J. Eukaryotic Microbiology 50: 439-448.

Lee, J. J., Shpigel, M., Freeman,  D., McLeod, S., Bowen,  S., Pearson, M. and Szostek, A. 2003. Physiological ecology and possible control strategy of a toxic marine dinoflagellate, Amphidinium sp,  From the benthos of a mariculture pond. Aquaculture. 217: 351-371.

Lee, J. J., Burnham, B. and Cervasco, M. 2004. A new modern species of soritid foraminifera Amphisorus hemprichii, from the Lizard Island Group (Great Barrier Reef, Australia). Micropaleontology 50: 357-368.

Lee, J.J., Rodriguez, D. Neori, A., Zmora, O. Symons, A. and Shpigel, M. 2004. Nutrient study for the transition from earthern sedimentation ponds to ones lined with pvc in integrated mariculture systems, what needs to be done? J. Appl. Phycol. 16: 341-353.

Lee, JJ. and Maria Correia. 2005. Endosymbiotic diatoms from previously unsampled habitats. Symbiosis 38: 251-260.

Lee, J.J. 2006. Algal symbiosis in foraminifera.  Symbiosis 42: 63-77

Lee, JJ. and  Reyes, D. 2006.  Initial studies of dinoflagellate recognition in Soritinae.  Symbiosis 42:89-93.

Lee, JJ. 2006. Symbiotic forms of life. In: Life as we know it. (J. Seckbach, ed.). Springer, Dordrecht, The Netherlands. Pp307-324.

Leszczyniecka M, DeSalle R, Kang DC, Fisher PB. 2004.  The origin of polynucleotide phosphorylase domains.  Mol Phylogenet Evol. 31: 123-30.

Lévêveque, C., T. Oberdorff, D. Paugy, M.L.J. Stiassny & P. Tedesco. Freshwater fish: diversity and distributional patterns at global and continental scales. Hydrobiologia. In press

Levinton, J.S., Suatoni, L., Wallace, W.G., Junkins, R., Kelaher, B., Allen B. 2003. Rapid loss of genetically based resistance to metals after the cleanup of a Superfund site. Proceedings of the National Academy of Science. 100(17): 9889-9891

Li, C.-K., Hu, Y., Wang, Y-q., and Meng, J. 2003. A new species of Gobiconodon from the Jehoh Biota and its implication to the age of the fauna. Chinese Science Bulletin 48: 177-182.

Li, C-K., J. Meng, and Y.-Q. Wang.  2007.  Dawsonolagus, a primitive lagomorph from the Eocene Arshanto Formation, Inner Mongolia, China. Bulletin of the Carnegie Museum.

Lienau EK, DeSalle R, Rosenfeld JA, Planet PJ. 2006.  Reciprocal illumination in the gene content tree of life.  Syst  Biol 55(3):441-453.

Lim, B. K., M. D. Engstrom, N. B. Simmons, and J. M. Dunlop.  2004. Phylogenetics and biogeography of least sac-winged bats (Balantiopteryx) based on morphological and molecular data. Mammalian Biology, 69: 225-237.

Limburg, K., J. Waldman, A. Kahnle, and K. Hattala.  2006.  Fisheries and fisheries management of the Hudson River estuary.  Pages 189-204 in J.S. Levinton and J.R. Waldman, editors. The Hudson River Estuary, Cambridge University Press.

Lipscomb, Diana, Norman Platnick, and Quentin Wheeler.  2003.  The intellectual content of taxonomy:  a comment on DNA taxonomy.  Trends in Ecology and Evolution 18: 65-66.

Liu X.F., G.M. Stewart, J.K. Cochran, C. Lee, R.A. Armstrong, D. Hirschberg, J.C. Miquel, and B. Gasser.  2005.  Constraints on the differences between POC measured in samples from Niskin bottles and in-situ pumps. Deep Sea Research I 52(7): 1324-1344

Liu, Z., M. S. Engel, and D. Grimaldi.  2006.  New Cretaceous Cynipoidea and their relationships, and diversification of the superfamily (Insecta: Hymenoptera).  American Museum Novitates, in press.

Loiselle, P.V. & M.L.J. Stiassny. 2007 Rehabilitation of the Malagasy endemic, Kuhlia sauvagii Regan, 1913 (Teleostei: Perciformes), with the designation of a neotype for Centropomus rupestris Lacépéde, 1802. American Museum Novitates. 2561, 1-13.

López-Fernádez, H., R.L. Honeycutt, M.L.J. Stiassny & K.O. Winemiller. 2005. Morphology, Molecules, and Character Congruence in the Phylogeny of South American Geophagine Cichlids (Perciformes, Labroidei). Zoologica Scripta. 34(6): 627-651.

Magoun, A. J., K. F. Abraham, J. E. Thompson, J. C. Ray, M. E. Gauthier, G. S. Brown, G. Woolmer, C. J. Chenier and F. N. Dawson. 2005. Caribou Distribution and Relative Abundance in the Hudson Bay Lowland of Ontario. Rangifer, Special Issue No. 16:105-121.

Maisey, J.G  2004. Endocranial morphology in fossil and Recent chondrichthyans. In Recent advances in the Origin and Radiation of Early Vertebrates (ed. Arratia, G., R. Cloutier & M. Wilson) pp. 139-170.  Munich, Verlag Pfeil.

Maisey, J.G  2004.  Morphology of the braincase in the broadnose sevengill shark Notorynchus (Elasmobranchii, Hexanchiformes), based on CT scanning.  Amer. Mus. Novitates 3429: 1-52.

Maisey, J.G and MM Chang.  2004.  Redescription of Elimma branneri and Diplomystus shengliensis and relationships between some basal clupeomorphs.  Amer. Mus. Novitates 3404: 1-35

Maisey, J.G, Gavin Naylor and David Ward.  2004.  Mesozoic elasmobranchs, neoselachian phylogeny, and the rise of modern neoselachian diversity. In Mesozoic Fishes III. Systematics, Paleoenvironments and Biodiversity. (ed. Arratia, G. and Tintori, A.) pp. 17-36.  Munich, Verlag Pfeil.

Maisey, J.G. and A.  Filleul.  2004.  Redescription of Santanichthys diasii (Otophysi, Characiformes) from the Albian of the Santana Formation and comments on its implications for otophysan relationships.  Amer. Mus. Novitates 3455: 1-21.

Maisey, J.G , M.R. de Carvalho and L. Grande.  2004.  Freshwater stingrays of the Green River Formation of Wyoming (early Eocene), with a description of a new genus and species and an analysis of its phylogenetic relationships (Chondrichthyes: Myliobatiformes).  Bull. Amer. Mus. Nat. Hist. 284: 1-136.

Maisey, J.G.  2005.  Braincase of the Upper Devonian shark Cladodoides wildungensis (Chondrichthyes, Elasmobranchii), with observations on the braincase in early chondrichthyans. Bulletin of the American Museum of Natural History 288: 1-103.

Maisey, J.G and J.H.G. Melo.  2005.  Some Middle Devonian (Eifelian- Givetian) fossil fish remains from the Pimenteira Formation of the Parnaiba Basin, Northeast Brazil.  Archivos do Museu Nacional 63(3): 495-505.

Maisey, J.G.  2007.  Heslerodidae (Chondrichthyes, Elasmobranchii), a new family of Paleozoic phalacanthous sharks.  Kirtlandia.  (in press)

Maisey, J.G. and Janvier, P.  2007. The Devonian vertebrates of south America and their biogeographical relationships.  In, Elliott, D., Maisey, J. G., Yu, X.(eds.), Morphology, Phylogeny and Biogeography of Fossil Fishes: A Symposium in Honor of Meemann Chang.  Munich, Verlag Dr. Friedrich Pfeil.

Maisey, J.G. 2008.  The braincase in Paleozoic symmoriiform and cladoselachian sharks.        Bulletin of the American Museum of Natural History. (in press).

Martini, I.P., R.L. Jefferies .R.I.G. Morrison, and K.F. Abraham. 2007. Polar coastal wetlands: development, structure, and landuse. Chapter X In Perillo, G.M.E., Wolanski, E., Cahoon, D., Brinsonm, M. (eds). Coastal Wetlands: An Integrated Ecosystem Approach. Elsevier B.V. Earth Sciences. in press.

Matlock, R. B., Jr. and R. de la Cruz. 2003. Ants as indicators of pesticide impacts in banana. Environmental Entomology 32:816–829.

Matlock, R. B., Jr. 2005. The impact of prey size on prey capture success, development rate and survivorship in Perillus bioculatus (Heteroptera: Pentatomidae), a predator of the Colorado potato beetle. Environmental Entomology. 34: 1048-1056.

Matlock, R. B., Jr. and P. J. Edwards. 2006. The influence of habitat variables on bird communities in forest remnants in Costa Rica. Biodiversity and Conservation. 15:2987-3016

Martin, SL, W-LP Li, AV Furano and S. Boissinot. 2005. The structures of mouse and human L1 elements reflect their insertion mechanism. Cytogenetics and Genome Research 110(1-4): 223-228.

McNeely, J., E.J. Sterling, and J. Mulongoy. What each of us can do to save biodiversity.  In: Sustaining Life: How Human Health Depends on Biodiversity. Edited by E. Chivian et al. Oxford Press. in press.

McCreless, E.M. and E.J. Sterling. 2006. Die Rolle von naturhistorischen Museen bei der Erhaltung der Biodiversität [The role of natural history museums in biodiversity conservation]. Bioskop (Austria; August 2006): 27-30.

McKenna, MC, A.R. Wyss, and J.J. Flynn. 2006.   Paleogene pseudoglyptodont xenarthrans from central Chile and Argentine Patagonia.  American Museum Novitates, no. 3536, p. 1-18.

Melo MC, Berkov A, Coscoran M. 2005. Redescription of Manicocoris rufipes (Fabricius, 1787), including nymphs I, II, III and V (Reduviidae: Harpactorinae: Apiomerini), and its association with Clusia fruits. Studies on Neotropical Fauna and Environment 40: 55-64.

Mellor, AA and RF Rockwell.  2006.  Habitat Shifts and parasite loads of Lesser Snow Geese (Chen caerulescens caerulescens).  Écoscience 13(4):497-502.

Mendelson III, JR, K.R. Lips, R.W. Gagliardo, G.B. Rabb, J.P. Collins, J.E. Diffendorfer, P. Daszak, R. Ibáñez D., K.C. Zippel, DP. Lawson, KM. Wright, S.N. Stuart, C.Gascon, H.R. da Silva, P.A. Burrowes, R.L. Joglar, E. La Marca, S. Lötters, L.H. du Preez, C. Weldon, A. Hyatt, J. Vicente Rodriguez-Mahecha, S. Hunt, H. Robertson, B. Lock, C.J. Raxworthy, D.R. Frost, R.C. Lacy, R.A. Alford, J.A. Campbell, G. Parra-Olea, F. Bolaños, J. Joaquin, C. Domingo, T. Halliday, J.B. Murphy, MH. Wake, LA. Coloma, S.L. Kuzmin, M.S. Price, K.M. Howell, M. Lau, R. Pethiyagoda, M. Boone, M.J. Lannoo, A.R. Blaustein, A. Dobson, R.A. Griffiths, M.L. Crump, D.B. Wake, E.D. Brodie Jr.  2006.  Confronting amphibian declines and extinctions. Science. 313: 48.

Mendez, M., A. Gomez, N. Bynum, R. Medellin, A.L. Porzecanski, E.J. Sterling. Conservation Education in Latin America: Availability of formal academic programs in conservation biology. Conservation Biology. in press.

Meng, J.  2003. The journey from jaw to ear Evolution of the mammalian middle ear. Biologist 50:154-158.

Meng, J., Hu, Y., Wang, Y., and Li C.-K.  2003. The ossified Meckel's cartilage and internal groove in Mesozoic mammaliaforms: implications to origin of the definitive mammalian middle ear. Zoological Journal of the Linnean Society 138: 431-448.

Meng, J., Hu, Y.-m., and Li, C. 2003. The Osteology of Rhombomylus (Mammalia, Glires) and its implication for Glires systematics and evolution.  Bulletin of the American Museum of Natural History 275: 1-247.

Meng, J., and Y.-M. Hu. 2004. Lagomorphs from the Yihesubu Upper Eocene of Nei Mongol (Inner Mongolia). Vertebrata PalAsiatica 42: 261-275.

Meng, J. 2004. Phylogeny and Divergence of Basal Glires. Bulletin of the American Museum of Natural History 285: 93-109.

Meng, J., G. J. Bowen, J. Ye, P. L. Koch, S.-Y. Ting, Q. Li, and X. Jin. 2004. Gomphos elkema (Glires, Mammalia) from the Erlian Basin: Evidence for the Early Tertiary Bumbanian Land Mammal Age in Nei-Mongol, China. American Museum Novitates 3425: 24 pp.

Meng, J. Y.-M. Hu, and C.-K. Li. 2005. Gobiolagus (Lagomorpha, Mammalia) from Ula Usa of Inner Mongolia and a review on Eocene Lagomorphs of Asia. Paleontologia Electronica 8-1: 1-23.

Meng, J., A. R. Wyss, Y.-M. Hu, Y.-Q. Wang, G. J. Bowen, and P. L. Koch. 2005. Glires (mammalia) from the late Paleocene Bayan Ulan Locality of Inner Mongolia. American Museum Novitates 3473: 1-25.

Meng, J. and A. R. Wyss. 2005. Glires (Lagomorpha, Rodentia). Pp. 145—158 In: The rise of placental mammals: origins and relationships of major extant clades, D. Archibald and K. Rose (editors). The Johns Hopkins University Press.

Meng, J., Y.-M. Hu, Y.-Q. Wang, and C.-K. Li. 2005. A new gobiconodont species (Mammalia) from the Early Cretaceous Yixian Formation of Liaoning, China. Vertebrata PalAsiatica 43: 1-10.

Meng, J., Y.-M. Hu, Y.-Q. Wang, X.-L. Wang, and C.-K. Li.  2006. A Mesozoic gliding mammal from northeastern China. Nature 444: 889-893 (Cover article; accompanying on-line supplementary data consisting of 7 tables, 13 figures and 96 pages of single-spaced supporting text.).

Meng, J., Y.-M. Hu, Y.-Q. Wang, and C.-K. Li. 2006. The mammal fauna in the Early Cretaceous Jehol Biota: Implications to diversity and biology of Mesozoic mammals. Geological Journal 41: 439-463.

Meng, J., J. Ye, W-Y. Wu, L.-P. Yue, X-J. Ni. 2006. A recommended boundary stratotype section for Xiejian Stage from northern Junggur Basin: implications to related bio-chronostratigraphy and environmental Changes. Vertebrata PalAsiatica 44: 205—236.

Meng, J., Y.-Q. Wang, X.-J. Ni, K. C., Beard, C.-K. Sun, Q. Li, X. Jin. B. Bai. 2007. New Stratigraphic data from the Erlian Basin: definitions, divisions and correlations of Paleogene stratigraphic units in Inner Mongolia. American Museum Novitates 3570: 1-31.

Meng, J. C.-K. Li, Y.-Q. Wang, X.-J. Ni. 2007. A new Eocene rodent from the lower Arshanto Formation in the Nuhetingboerhe (Camp Margetts) area, Inner Mongolia. American Museum Novitates 3569: 1-18.

Meng, J. X.-J. Ni, C.-K Li. K.C. Beard, D.L. Gebo, Y.-Q. Wang and H.-J. Wang.  2008.  New material of Alagomyidae (Mammalia, Glires) from the Late Paleocene Subeng locality, Inner Mongolia. American Museum Novitates (52 pages incuding 6 tables, and 15 figures).

Mitra, S. S. and P. J. Lindsay.  2005 An unprecedented spring incursion of southeastern North American landbirds to coastal New York. Kingbird 55: 213-227.

Mitra, S.S. and C.J. Raithel, Evidence of post-migratory movements among landbirds wintering on Block Island, Rhode Island 2000-01.  North American Birds 54: 499-504, 2001.

Molcard, A, A.C. Poje & T. M. Ozgokmen.  2006.  Directed drifter launch strategies for Lagrangian data assimilation using hyperbolic trajectories., Journal of Ocean Modeling, 12, p237-267.

Moller, P., Schugardt, C. and Kirschbaum, F. 2004. Permanent and seasonal expression of sexual dimorphisms in a weakly electric fish, Mormyrus rume proboscirostris Boulenger 1898 (Mormyridae, Teleostei). Environ. Biol. Fishes 70:175-184.

Moller, P. 2005. Only five senses? The world from an electric fish’s perspective. In Proc. Seventh Int. Conf. Environm. Enrichment, Clum, N., Silver, S., and Thomas, P. (eds.), pp. 161-169

Moller, P. 2006. Electrocommunication: History, insights, and new questions. In: Communication in Fishes. Ladich, F., Collin, S.P., Moller, P. and Kapoor, B.G. (eds.). Science Publishers Inc., Enfield, NH, USA, pp. 579-598

Monello, R.J., Dennehy, J.J., Murray, D. & Wirsing A.J.  2006. Species differences among native ranids in coping with an exotic invader, the bullfrog Rana catesbeiana. Journal of Herpetology, 40: 403-407.

Mori SA, Gracie CA, Hecklau EF, Lobova TA, Berkov A, de Granville J-J. 2005. Documenting plant diversity in central French Guiana: the first step toward understanding biocomplexity. In Friis I & Balslev H, eds. Plant Diversity and Complexity: Local, Regional and Global Dimensions. Biol. Skr. 55: 11-24.

Moyle, R. G.,  M. Lakim, J. Nais, F. H. Sheldon, and J. Cracraft. 2006.  Reconsideration of the phylogenetic relationships of the enigmatic Bornean Bristlehead (Pityriasis gymnocephala).  Mol. Phylo. Evol. 39:893-898.

Moyle, R. G., R. Terry Chesser, R. O. Prum, P.Schikler, and J. Cracraft.  2006. Phylogeny and evolutionary history of Old World suboscine birds (Aves: Eurylaimides).  Amer. Mus. Novitates 3544:1-22.

Munshi-South, J. 2005. Boiga dendrophila (Mangrove Snake) Diet. Herpetological Review 36(2):188.

Munshi-South, J., and G. S. Wilkinson. 2006. Isolation and characterization of polymorphic microsatellite loci in Bornean treeshrews (Tupaia spp.) Molecular Ecology Notes 6: 698-699.

Munshi-South, J., and G. S. Wilkinson. 2006. Diet influences life span in parrots (Order: Psittaciformes). Auk 123(1):108-118.

Munshi-South, J.  2007.  Extra-pair paternity and the evolution of testis size in a behaviorally monogamous tropical mammal, the large treeshrew (Tupaia tana).  Behavioral Ecology and Sociobiology  62: 201-212.

Munshi-South, J., L. H. Emmons, and H. Bernard. 2007. Behavioral monogamy and fruit availability in the large treeshrew, Tupaia tana, in Sabah, Malaysia. Journal of Mammalogy 88(6): 1427-1438.

Narechania A, Terai M, Chen Z, DeSalle R, Burk RD.,  2004.  Lack of the canonical pRB-binding domain in the E7 ORF of artiodactyl papillomaviruses is associated with the development of fibropapillomas.  J Gen Virol. 85: 1243-1250.

Narechania A, Chen Z, DeSalle R, Burk RD. 2005.  Phylogenetic incongruence among oncogenic genital alpha  human papillomaviruses. J  Virol 79(24):15503-15510.

Navodaru, I., and J.R. Waldman.  2003.  Shads of Eastern Europe from the Black Sea: review of species and fisheries.  American Fisheries Society Symposium Series 35:69-76.

Nguyen, L. P., E. Nol and K. F. Abraham. 2003. Nest success and habitat selection of the Semipalmated Plover on Akimiski Island, Nunavut.  Wilson Bulletin 115(3):285-291.Nguyen, L P., E. Nol, and K. F. Abraham. 2007. Using digital photographs to evaluate the effectiveness of plover egg crypsis. Journal of Wildlife Management. 71(6):2084-2089.

Nguyen, L. P., R. F. Rockwell, and D. Larsen. 2004. Atypical nest site of a Semipalmated Plover. Wilson Bulletin 116(2) 184-186.

Nguyen, L. P., K. F. Abraham and E. Nol.. 2006. The influence of Arctic Terns on survival of semipalmated plover nests. Waterbirds 29:100-104.

Nguyen, L. P. T., F. Saito, J. Kojima and J. M. Carpenter. 2006. Vespidae of Viet Nam (Insecta: Hymenoptera) 2.Taxonomic notes on Vespinae. Zoological Science 23: 95-104.

Ni. X.-J., J. Meng, W.-Y. Wu, J. Ye. 2006. A new Early Oligocene peradectine marsupial (Mammalia) from the Burqin region of Xinjiang, China. Naturwissenschaften 94: 23-241.

Ni, X.-J., K. C., Beard, J. Meng, Y.-Q. Wang and D. Gebo. 2007. Discovery of the first early Cenozoic euprimate (Mammalia) from Inner Mongolia. American Museum Novitates 3571: 1-11.

Nickum, J.G., H.L. Bart, Jr., P.R. Bowser, I.E. Greer, C. Hubbs, J.A. Jenkins, J.R. MacMillan, J.W. Rachlin, J.D. Rose, P.W. Sorensen, J.R. Tomasso. 2004  Guidelines for the Use of Fishes in Research. American Fisheries Society, Bethesda, Maryland, 53 pages.

Nolan, K.A., J.R. Waldman, and I.I. Wirgin.  2003.  Intraspecific and interspecific molecular differentiation of American shad and Alabama shad: a synthesis.  American Fisheries Society Symposium Series 35:295-302.

Norell, M. A., and W. C. Wheeler. 2003. Missing entry replacement data analysis: a statistical approach to dealing with missing data in paleontological and total evidence data sets. J. Vert. Paleont. 23:275-283.

O, P. C., P. M. Kotanen and K. F. Abraham. 2006. Geese and grazing lawns: responses of the grass Festuca rubra to defoliation in a subarctic coastal marsh. Canadian Journal of Botany 84: 1732-1739.

O, P.C., P.M. Kotanen, and K.F. Abraham. 2005. Survival and growth of the forage grass Festuca rubra in naturally and artificially devegetated sites in a sub-arctic coastal marsh. Écoscience 12: 279-285.

Oceguera-Figueroa, A., León-Règagnon, V., and  Siddall, M.E. 2005. Phylogeny and revision of  Erpobdelliformes (Annelida, Arhynchobdellida)  from Mexico based on nuclear and mithochondrial  gene sequences. Revista Mexicana de Biodiversidad  76: 191-198.

Ogden, T. H., M. F. Whiting, and W. C. Wheeler. 2005. Poor taxon sampling, poor character sampling, and nonrepeatable analyses of a contrived dataset do not provide a more credible estimate of insect phylogeny: a reply to Kjer. Cladistics 21:295-302.

O'Grady, P. M., Bonacum, J., DeSalle, R., and Val, F. C. 2003. The placement of the Engiscaptomyza, Grimshawomyia, and Titanochaeta, three clades of endemic Hawaiian Drosophilidae. Zootaxa 159: 1-16.

Ojanguren Affilastro, A.A., Mattoni, C.I. and Prendini, L. 2007. The genus Brachistosternus (Scorpiones: Bothriuridae), in Chile, with descriptions of two new species. American Museum Novitates 3564: 144.

O’Leary, M. A., J. Gatesy, and M. J. Novacek. 2003  Are dental data really at odds with molecular data? The morphological evidence for whale phylogeny (re)reexamined. Systematic Biology 52(6):853-864.

O'Leary, M. A., M. Allard, M. J. Novacek, J. Meng, and J. Gatesy.  2004. Building the Mammalian Sector of the Tree of Life – Combining different data and a discussion of divergence times for placental mammals, pp 490-516 In: Assembling the Tree of Life, J. Cracraft and M. J. Donoghue (editors), Oxford University Press.

Olival, K. J., E. O. Stiner, and S. L. Perkins.  Detection of Hepatocystis sp. in Southeast Asian flying foxes (Pteropodidae) using microscopic and molecular methods. Journal of Parasitology.  In press.

Oliveira DC, Wintermute EH, Etges WJ, Heed WB, O'Grady PM, DeSalle R., 2003. Hierarchical structure in the Drosophila mojavensis cluster (Diptera: Drosophilidae).  Hereditas 139: 223-7.

Paton, T. A., A. J. Baker, J. G. Groth, and G. F. Barrowclough.  2003.  RAG-1 sequences resolve phylogenetic relationships within Charadriiform birds.  Molecular Phylogenetics & Evolution 29:268-278.

Pellenes, P., C. D’Haese, X. Bellés, M-D. Piulachs, F. Legendre, W. C. Wheeler, P. Grandcolas. The evolutionary transition from subsocial to eusocial behavior in Dictyoptera: phylogenetic evidence for modification of the “shiftdependent- care” hypothesis with a new subsocial cockroach. Molecular Phylogenetics and Evolution, in press.

Peñalver, E. and D. Grimaldi.  2005.  Assemblages of mammalian hair and blood-feeding midges (Insecta: Diptera: Psychodidae: Phlebotominae) in Miocene amber.  Transactions of the Royal Society of Edinburgh (Earth Sciences) 96: 177-195.

Peñalver, E. and D. Grimaldi.  2006.  New data on Miocene butterflies in Dominican amber (Lepidoptera: Riodinidae and Nymphalidae) with the description of a new nymphalid.  American Museum Novitates 3519: 1-17.

Peñalver, E.,D. Grimaldi, and X. Delclòs.  2006.  Early Cretaceous spider web with its prey.  Science 312: 1761.

Peñalver, E., M. S. Engel, and D. Grimaldi.  2006.  Fig wasps (Hymenoptera: Agaonidae) in Miocene amber from the Dominican RepublicAmerican Museum Novitates 3541: 16 pp.

Perez, M.H., Wallace, W.G. 2004. Differences in prey capture in grass shrimp, Palaemonetes pugio, collected along an environmental impact gradient. Arch. Environ. Contam. Toxicol. 46, 81-89

Perkins, S. L., R. B. Budinoff, and M. E. Siddall.  2005.  New gammaproteobacteria associated with blood-feeding leeches and a broad phylogenetic analysis of leech endosymbionts.  Applied and Environmental Microbiology  71:5219-5224.

Perkins, S. L., I. N. Sarkar, and R. Carter.  2007.  The phylogeny of rodent malaria parasites: simultaneous analysis across three genomes.  Infection, Genetics, and Evolution.  7:74-83.

Perkins, S. L.,A. Rothschild, and E. Waltari.  Infections of the malaria parasite, Plasmodium floridense, in the invasive anole, Anolis sagrei, in Florida. Journal of Herpetology.  In press.

Pezzanite, B, RF Rockwell, JC Davies, MJJE Loonen and RJ Seguin.  2005.  Has habitat degradation affected foraging behaviour and reproductive success of lesser snow geese (Chen caerulescens caerulescens)?  Ecoscience 12:439-446.

Phillips, A. J. and Siddall, M. E. 2005.  Phylogeny of the New World medicinal leech family  Macrobdellidae (Oligochaeta: Hirudinida:  Arhynchobdellida). Zoologica Scripta 34: 559-564.

Phillips, S. J., R. P. Anderson, and R. E. Schapire. 2006. Maximum entropy modeling of species geographic distributions. Ecological Modelling, 190:231–259.

Piaggio AJ and S. L. Perkins. 2005. Molecular phylogeny of North American big-eared bats Vespertilionidae: Corynorhinus): inter- and intraspecific relationships inferred from mitochondrial and nuclear DNA sequences.  Molecular Phylogenetics and Evolution 37:762-765.

Piaggio, A. J., J. J. Johnston, and S. L. Perkins.  Development of polymorphic microsatellite loci for the common vampire bat, Desmodus rotundus (Chiroptera: Phylostomidae).  Molecular Ecology Notes, in press.

Picket, K. M., G. L. Tolman, W. C. Wheeler, and J. W. Wenzel. 2005. Parsimony overcomes statistical inconsistency with the addition of more data from the same gene. Cladistics 21:438-445.

Pickett, K. M., J. M. Carpenter, and W. C. Wheeler. 2006. A systematic update of Polistes (Hymenoptera: Vespidae), with phylogenetic consideration of social behavior. Annales Zoologici Finnici, in press.

Planet PJ, Kachlany SC, Fine DH, DeSalle R, Figurski DH. 2003.  The Widespread Colonization Island of Actinobacillus actinomycetemcomitans.  Nat Genet. 34: 193-8.

Platnick, Norman and David Penney. 2004. A revision of the widespread spider genus Zimiris (Araneae, Prodidomidae).  Amer. Mus. Novitates, no. 3450, pp. 1-12, figs. 1-24.

Platnick, Norman. 2004. On a third group of flattened ground spiders from Australia (Araneae, Lamponidae).  Amer. Mus. Novitates, no. 3462, pp. 1-7, figs. 1-8.

Platnick, Norman and Darrell Ubick. 2005. A revision of the North American spider genus Anachemmis Chamberlin (Araneae, Tengellidae).  Amer. Mus. Novitates, no. 3477, pp. 1-20, figs. 1-40, charts 1-3, map 1.

Platnick, Norman, Mohammad U. Shadab, and Louis N. Sorkin. 2005. On the Chilean spiders of the family Prodidomidae (Araneae, Gnaphosoidea), with a revision of the genus Moreno Mello-Leitão.  Amer. Mus. Novitates, no. 3499, pp. 1-31, figs. 1-94.

Platnick, Norman. 2006. [Review of] Foundations of Phylogenetic Systematics, by J.-W. Wägele.  Quarterly Review of Biology 81: 56-57.

Platnick, Norman, and Barbara Baehr. 2006.   A revision of the Australasian ground spiders of the family Prodidomidae (Araneae: Gnaphosoidea).  Bull. Amer. Mus. Nat. Hist., no. 298, pp. 1-287, figs. 1-658, maps 1-47.

Platnick, Norman, and Tharina L. Bird. 2007. On the first African spiders of the subfamily Molycriinae (Araneae, Prodidomidae).  American Museum Novitates, no. 3552, pp. 1-8, figs. 1-16.

Platnick, Norman and  Norman Horner. 2007. A new species of Drassyllus (Araneae, Gnaphosidae) from west Texas.  Jour.  Arachnology 35: 197-198.

Platnick, Norman, and Darrell Ubick. 2007. On a new species group in the spider genus Socalchemmis (Araneae, Tengellidae).  Jour. Arachnology 35: 205-207.

Platnick, Norman, and Darrell Ubick. 2007. A revision of the spider genus Zorocrates Simon (Araneae, Zorocratidae).  Amer. Mus. Novitates 3579: pp. 1-44, figs. 1-119, maps 1-4.

Pol, D., Norell, M. A., and Siddall, M. E. 2004.  Measures of stratigraphic fit to phylogeny and  their sensitivity to tree size, tree shape, and  scale. Cladistics, 20: 64-75.

Porzecanski, A. L. and J. Cracraft.  2005.   Cladistic Analysis of Distributions and Endemism (CADE): Using raw distributions of birds to unravel the biogeography of the South American aridlands.  J. Biogeography 32:261-275.

Prendini, L. 2003. A new genus and species of bothriurid scorpion from the Brandberg Massif, Namibia, with a reanalysis of bothriurid phylogeny and a discussion of the phylogenetic position of Lisposoma Lawrence. Systematic Entomology 28(2): 149–172.

Prendini, L., Crowe, T.M. and Wheeler, W.C. 2003. Systematics and biogeography of the family Scorpionidae Latreille, with a discussion of phylogenetic methods. Invertebrate Systematics 17(2): 185–259.

Prendini, L. 2003. Discovery of the male of Parabuthus muelleri, and implications for the phylogeny of Parabuthus (Scorpiones: Buthidae). American Museum Novitates 3408: 1–24.

Prendini, L. 2003. Revision of the genus Lisposoma Lawrence, 1928 (Scorpiones: Bothriuridae). Insect Systematics and Evolution 34: 241–264.

Prendini, L. 2004. Systematics of the genus Pseudolychas Kraepelin (Scorpiones: Buthidae). Annals of the Entomological Society of America 97(1): 37–63.

Prendini, L. 2004. The systematics of southern African Parabuthus Pocock (Scorpiones, Buthidae): Revisions to the taxonomy and key to the species. Journal of Arachnology 32(1): 109–186.

Prendini, L. 2005. Revision of Karasbergia Hewitt (Scorpiones: Buthidae), a monotypic genus endemic to southern Africa. Journal of Afrotropical Zoology 1: 7793.

Prendini, L. 2005. Comment on “Identifying spiders through DNA barcodes”. Canadian Journal of Zoology 83(3): 481–491.

Prendini, L. 2005. On Hadogenes angolensis Lourenço, 1999 syn. n. (Scorpiones, Liochelidae), with a redescription of H. taeniurus (Thorell, 1876). Revue suisse de Zoologie 112(2): 1–28.

Prendini, L. 2005. New records and observations on the natural history of Lisposoma elegans and Lisposoma josehermana (Scorpiones: Bothriuridae). American Museum Novitates 3487: 1–11.

Prendini, L. and W. C. Wheeler. 2005. Scorpion higher phylogeny and classification, taxonomic anarchy, and standards for peer review in online publishing. Cladistics 21:446-494.

Prendini, L., Weygoldt, P. and Wheeler, W.C. 2005. Systematics of the Damon variegatus group of African whip spiders (Chelicerata: Amblypygi):Evidence from behaviour, morphology and DNA. Organisms, Diversity and Evolution, 5:203-236.

Prendini, L. 2006. New South African flat rock scorpions (Liochelidae: Hadogenes). American Museum Novitates 3502: 1–32.

Prendini, L., Volschenk, E.S., Maaliki, S. and Gromov, A.V. 2006. A ‘living fossil’ from Central Asia: the morphology of Pseudochactas ovchinnikovi Gromov, 1998 (Scorpiones: Pseudochactidae), with comments on its phylogenetic position. Zoologische Anzeiger 245: 211248. (cover article)

Provenzano, F., S.A. Schaefer, J.N. Baskin, and R. Royero-Leon. 2003. New, possibly extinct lithogenine loricariid (Siluriformes, Loricariidae) from northern Venezuela. Copeia,  2003(3):562-575.

Qiu W. G.; Schutzer S. E., Bruno J. F., Attie O., Xu Y., Dunn J. J., Fraser C. M., Casjens S. R., and Luft B. J.. 2004. Genetic exchange and plasmid transfers in Borrelia burgdorferi sensu stricto revealed by three-way genome comparisons and multilocus sequence typing. PNAS 101 (39): 14150-14155.

Qiu, W. G.; Schisler, N. J.; Stoltzfus, A. 2004. The evolutionary gain of splicesomal introns: Sequence and phase preferences.  Molecular Biology and Evolution 21:1252-1263.

Rachlin, J.W., B.E. Warkentine, A. Pappantoniou. 2007. Use of a parsimony algorithm as a method for evaluating ichthyofaunal distribution and co-occurrence in an urban stream. Journal of Freshwater Ecology (in press).

Rachlin, J.W., B.E. Warkentine, A. Pappantoniou. 2007. An evaluation of the ichthyofauna of the Bronx River, a resilient urban waterway. Northeastern Naturalist (in press).

Ramírez, Mart¡n J., Lara Lopardo, and Norman Platnick. 2004. Notes on Chilean anapids and their webs.  Amer. Mus. Novitates, no. 3428, pp. 1-13, figs. 1-31.

Ramírez, M.J., Coddington, J.A., Maddison, W.P., Midford, P., Prendini, L., Miller, J., Griswold, C.E., Hormiga, G., Sierwald, P., Scharff, N., Benjamin, S.P. and Wheeler, W.C. 2007. Linking of digital images to phylogenetic data matrices using a morphological ontology. Systematic Biology 56(2): 283294.

Reddy, S. and J. Cracraft.  2007. Old World shrike-babblers (Pteruthius) belong with New World vireos (Vireonidae).  Mol. Phylogen. Evol. 44:1352-1357.

Reece, K. S., Siddall, M. E., Stokes, N. A. and  Burreson, E. M. 2004. Molecular Phylogeny of the  Phylum Haplosporida Based on Two Independent Gene  Sequences. Journal of Parasitology, 90: 1111-1122.

Reguero, M, D.A. Croft, J.J. Flynn, and A.R. Wyss.  2003. Small archaeohyracids (Typotheria, Notoungulata) from Chubut Province, Argentina, and Central Chile: Implications for trans-Andean temporal correlation.  Fieldiana (Geology), N.S., no. 48, p. 1-17 (plus pages i-iii, and endpiece illustration).

Ribas, C. C., R. Gaban-Lima, C. Y. Miyaki, and J. Cracraft.  2005.  Historical biogeography and diversification within the Neotropical parrot genus Pionopsitta (Aves; Psittacidae).  J. Biogeography 32:1409-1427.

Ribas, C. C., R. G. Moyle, C. Y. Miyaki, and J. Cracraft.  2007. The assembly of montane biotas: linking Andean tectonics and climatic oscillations to independent regimes of diversification in Pionus parrots. Proc. Roy. Soc. Lond. 274:2399-2408.

Richter, S., J. Olesen, and W. C. Wheeler. 2007. Phylogeny of Branchiopoda (Crustacea) based on a combined analysis of morphological data and six molecular loci. Cladistics 23:301-336.

Riginos, C., M.J. Hickerson, C. Henzler, and C. W. Cunningham. 2004. Differential patterns of male and female trans-Atlantic gene flow in the blue mussel, Mytilus edulis. Evolution 58: 2438-2451.

Rockwell, R.F., K.F. Abraham, P. Matulonis, M. Usai, D. Larsen, C.R. Witte, F. Cooke, D. Pollak, and R.L. Jefferies. 2007. Birds of Wapusk National Park. Parks Canada. in press.

Rockwell, RF, KF Abraham, CR Witte, P Matulonis, M Usai, D Larsen, F Cooke, D Pollak and RL Jefferies.  2007. The Birds of Wapusk National Park.  Parks Canada, Ottawa.

Rockwell, RF, BM Pezzanite and P Matulonis.  2003.  Developmental abnormalities in wild populations of birds: examples in lesser snow geese (Chen caerulescens caerulescens).  American Museum of Natural History Novitates 3400:1-14.

Rockwell, RF, CR Witte, RL Jefferies and PJ Weatherhead.  2003.  Response Of Nesting Savannah Sparrows To 25 Years Of Habitat Change In A Snow Goose Colony.  Ecoscience 10:33-37.

Rodríguez-Muñoz, R., J.R. Waldman, C. Grunwald, N. K. Roy, and I. Wirgin.  2004.  Mitochondrial DNA variation in sea lamprey between North American and Spanish rivers.  Journal of Fish Biology 64:783-787.

Romov, P. A.; Li, F. B.; Lipke, L. N.; Epstein, S. L.; Qiu, W. G.. 2006.  Comparative genomics reveals long, evolutionarily-conserved, low-complexity islands in yeast proteins.  Journal of Molecular Evolution. 63 (3): 415-425.

Rosenbaum HC, Weinrich MT, Stoleson SA, Gibbs JP, Baker CS, DeSalle R., 2003.  The effect of differential reproductive success on population genetic structure: correlations of life history with matrilines in humpback whales of the gulf of maine.  J Hered. 93: 389-99.

Rosenblum, E., M.J. Hickerson, and C. Moritz. 2007. A multilocus perspective on colonization accompanied by selection and gene flow (in press; Evolution)

Rosenfeld JA, Sarkar IN, Planet PJ, Figurski DH,and DeSalle R.2004. ORFcurator: molecular curation of genes and gene clusters in prokaryotic organisms. Bioinformatics. 12: 3462-5.

Ross, A.J., and D Grimaldi.  2004. Raphidiomimula, an enigmatic new cockroach in Cretaceous amber from Myanmar (Burma) (Insecta: Blattodea: Raphidiomimidae). Systematic Palaeontology 2: 101-104.

Ross, R.K., K.F. Abraham, D. Fillman, B.T. Collins and R.H. Kerbes. 2004. A helicopter-based survey method for monitoring the nesting component of snow goose colonies. Northeast Wildlife 58:9-22.

Rossman, D. A. and F. T. Burbrink. 2005. Species limits within the Mexican Garter   Snakes of the  Thamnophis godmani complex Occasional Papers of the LSU    Museum of Natural Science.

Rougier, G.W., J. R. Wible, and M. J. Novacek. 2004  New specimen of Deltatheroides cretacicus (Metatheria, Deltatheroidea) from the Late Cretaceous of Mongolia. Bulletin Carnegie Museum of Nat. Hist. 36: 245-266.

Rousset V, Rouse GW, Siddall ME, Tillier A and  Pleijel F. 2004. The phylogenetic position of  Siboglinidae (Polychaeta, Annelida), inferred  from 18S rRNA, 28S rRNA, and morphological data.  Cladistics, 20: 518 -533

Rousset, V., Pleijel, F., Rouse, G.W., Erseus,  C., Siddall, M.E., 2007. A molecular phylogeny of  annelids. Cladistics 23, in press.

Russell, Kimberly N., Martin T. Do, Jeremy C. Huff, and Norman Platnick.  Introducing SPIDA-web: Wavelets, neural networks, and Internet accessibility in an image-based automated identification system.  In MacLeod, Norman (ed.), Automated Taxon Identification in Systematics: Theory, Approaches, and Applications.  Systematics Association Special Volume, Taylor & Francis, pp. 131-152.

Ryan T, Gregory and DeSalle, R.  Chapter 10: Comparative genomics in prokaryote.  Pp 245-290 in Evolution of the Genome (edited by T Ryan Gregory).  Elsevier, New York.

Satta, Y., M.J. Hickerson, H. Watanabe, C.O. O’hUigin, and J. Klein. 2004. Ancestral population sizes and species divergence times in the primate lineage on the basis of intron BAC end sequences.  Journal of Molecular Evolution 59: 478-487

Schaefer, S.A. 2003. Subfamily Hypoptopomatinae. Pp. 321-329. In: R.E. Reis, S.O. Kullander & C.J. Ferraris, Jr. (eds.), Checklist of the Freshwater Fishes of South and Central America. Porto Alegre, Brazil: Edipucrs, 627 p.

Schaefer, S.A. 2003. Family Astroblepidae. Pp. 312-317. In: R.E. Reis, S.O. Kullander & C.J. Ferraris, Jr. (eds.), Checklist of the Freshwater Fishes of South and Central America. Porto Alegre, Brazil: Edipucrs, 627 p.

Schaefer, S.A. 2003. Family Scoloplacidae. Pp. 310-311. In: R.E. Reis, S.O. Kullander & C.J. Ferraris, Jr. (eds.), Checklist of the Freshwater Fishes of South and Central America. Porto Alegre, Brazil: Edipucrs, 627 p.

Schaefer, S.A. 2003 [review of] Conservation and Management of Ornamental Fish Resources of the Rio Negro Basin, Amazonia, Brazil- Project Piaba. Ning Labbish Chao, Paulo Petry, Gregory Prang, Leonard Sonneschien, and Michael Tlusty (eds.). Editoria de Universidade do Amazonas, Manaus, Brazil. 2001. Copeia, 2003(3):672-675.

Schaefer, S.A. 2003. Relationships of Lithogenes villosus Eigenmann, 1909 (Siluriformes: Loricariidae): Evidence from high-resolution computed microtomography. American Museum Novitates, 3401:1-55.

Schaefer, S.A., Provenzano, F., de Pinna, M.C.C., and Baskin, J.N. 2005. New and noteworthy Venezuelan glanapterygine catfishes (Siluriformes, Trichomycteridae), with a discussion of their biogeography and psammophily. American Museum Novitates, 3496:1-27.

Schaefer, S.A. 2006 [review of] Morphological Evolution, Aptations, Homoplasies, Constraints and Evolutionary Trends. Catfishes as a Case Study on General Phylogeny and Macroevolution, by Rui Diogo. Enfield (New Hampshire): Science Publishers, x+491 p; ill.; index. 2005. Quart. Rev. Biol.  81(3):276-278.

Schaefer, S.A. Chapter 18. Family Alestidae, tribe Petersiini. In: Freshwater Fishes of West Central Africa (Cameroon, Gabon, and Congo), G. Teugels, M.L.J. Stiassny, C.D. Hopkins (eds.), Musée Royal de l’Afrique Central, Tervuren, and Institut de Recherche pour le Développement, Paris. in press.

Schawaroch, V.,D. Grimaldi, and A. Klaus. 2005.  Focusing on morphology:  applications and implications of confocal laser scanning microscopy (Diptera: Campichoetidae, Camillidae, Drosophilidae).  Proceedings of the Entomological Society of Washington 107:  323-335.

Schawaroch, V. and Li, S.C.  2007. Testing mounting media to eliminate background noise in confocal microscope 3-D images of insect genitalia. Scanning, 29(4): 177-184.

Schelly, R., M.L.J. Stiassny & L.Seegers. 2003.  Neolamprologus devosi sp.n. a new riverine lamprologine cichlid (Teleostei: Cichlidae) from the lower Malagarasi River, Tanzania. Zootaxa 373: 1-11.

Schelly, R.C. & M.L.J. Stiassny. 2004. Revision of the Congo River Lamprologus Schilthuis,1891 (Teleostei: Cichlidae), with description of two new species. American  Museum Novitates. 3451, 40pp.

Schliewen, U.R. & M.L.J. Stiassny. 2003. Etia nguti, a new genus and species of cichlid fish from the River Mamfue, Upper Cross River basin, Cameroon, Central Africa. Ichthyol. Explor. Freshwaters, 14(1): 61-72.

Schliewen, U.K. & M.L.J. Stiassny. 2006 A new species of Nanochromis (Teleostei: Cichlidae) from Lake Mai Ndombe, central Congo Basin, Democratic Republic of Congo. Zootaxa 1169:33-46.

Schiffman M, Herrero R, DeSalle R, Hildesheim A, Wacholder S, Rodriguez AC, Bratti MC, Sherman ME, Morales J, Guillen D, Alfaro M, Hutchinson M, Wright TC, Solomon D, Chen Z, Schussler J, Castle PE, Burk RD.2005.  The carcinogenicity of human papillomavirus types reflects viral evolution. Virology. 2005 Jun 20;337(1):76-84.

Schiffman M, Herrero R, Desalle R, et al. 2005. The  carcinogenicity of human papillomavirus types reflects  viral evolution. Virology  337(1):76-84.

Schreibman, M., J.W. Rachlin, and B.E. Warkentine. 2005. Examining Chile’s tenth region  and the tri-state estuary models for understanding issues in the management of world fisheries. Pages 205-216. In: Hellman, R.G. and R.A. Dujisin eds., Chile Litoral: Dialogo cientifico sobre los ecosistemas costeros. 406 pages.  Flacso, Santiago Chile.

Schuh, R. T.  2004.  Revision of Tuxedo Schuh (Heteroptera: Miridae).  American Museum Novitates  3435: 26 pp.

Schuh, R. T. and M. D. Schwartz.  2004.  New genera, new species, new synonyms, and new combinations in North America and Caribbean Phylinae (Heteroptera: Miridae).  American Museum Novitates  3436: 36 pp.

Schuh, R. T.  2004.  Revision of Europiella in North America, with the description of a new genus (Heteroptera: Miridae: Phylinae).  American Museum Novitates  3463:  58 pp.

Schuh, R. T. and M. D. Schwartz.  2005.  Review of North American Chlamydatus Curtis species, with new synonymy and the description of two new species (Heteroptera: Miridae: Phylinae).  American Museum Novtiates  3471: 55 pp.

Schuh, R.T.  2006.  Moiseevichia leyserae, a new genus and new species of Asteraceae-feeding plant bugs from South Africa (Heterotpera: Miridae: Phylinae).  Russian Entomological Journal  15(2):  97—102.

Schuh, R.T.  2006.  Heissophila macrotheleae, a new genus and new species of Plokiophilidae from Thailand (Hemiptera, Heteroptera), with comments on the family diagnosis.  Denisia  19: 637—645.

Schuh, R.T.  2006.  Revision, Phylogenetic, Biogeographic, and Host  Analysis of the Endemic Western North American Phymatopsallus Group, with the Description of 9 New Genera and 15 New Species (Insecta: Hemiptera: Miridae: Phylinae). Bulletin of the American Museum of Natural History  301: 114 pp.

Schuh, R.T., G. Cassis, and E. Guilbert.  2006.  Description of the first recent macropterous species of Vianaidinae (Heteroptera: Tingidae) with comments on the phylogenetic relationships of the family within the Cimicomoprha.   Journal of the New York Entomological Society  114:38--53.

Schulmeister, D. and W. C. Wheeler. 2004. Comparative and Phylogenetic analysis of developmental sequences. Evolution and Development, 6:50-57.

Schutt, W.A. and N. B. Simmons.  2006. Quadrupedal bats: form, function and phylogeny. Pp. 15-159 in: Functional and Evolutionary Ecology of Bats.  (A. Zubaid, G. McCracken, and T. Kunz, Eds.). Oxford University Press.

Seebaugh, D.R., Wallace, W.G. 2004. The importance of metal-binding proteins in the partitioning of Cd and Zn as trophically available metal (TAM) in the brine shrimp Artemia franciscana. Mar. Ecol. Prog. Ser. 272:215-230

Seebaugh, D.R., Goto, D, Wallace, W.G. 2005. Bioenhancement of cadmium transfer along a multi-level food chain. Mar. Environ. Res.59:473-491

Seebaugh, D.R., Estephan, A., Wallace, W.G. 2006. Relationship between dietary cadmium absorption by grass shrimp (Palaemonetes pugio) and trophically available cadmium in amphipod (Gammarus lawrencianus) prey. Bull. Environ. Contam. Toxicol. 76:16-23.

Siddall, M. E. and Jensen, K. 2003. Incorrect evaluation of the information content of  multistate characters. Cladistics, 19: 269-272.

Siddall, M. E. and Perkins S. L. 2003. Brooks  Parsimony Analysis: A valiant failure. Cladistics  19: 554-564

Siddall, M.E. 2004. Fallacies of False  Attribution as the Defense of BPA by Brooks  Dowling, van Veller, and Hoberg. Cladistics 20:  376-377.

Siddall, M. E. and Borda, E. 2004. Leech  collections from Chile Including two new species  of Helobdella. American Museum Novitates, 3457

Siddall,  M. E., S. L. Perkins, and S. S. Desser.  2004.  Leech mycetome symbionts are a new lineage of a-proteobacteria related to the Rhizobiacaea.  Molecular Phylogenetics and Evolution  30:178-186.

Siddall, M. E. and Gaffney, E. 2004. Observations  on the Leech Placobdella ornata Feeding from Bony  Tissues of Turtles. Journal of Parasitology. 90:  1186-1188.

Siddall, M. E., Borda, E., and Rouse G. W. 2004.  Towards a Tree of Life for the Annelida.  Assembling the Tree of Life. Oxford University  Press, New York.

Siddall, M. E. 2005. Bracing for another decade  of deception: The Promise of Secondary BPA.  Cladistics. 21: 90 - 99

Siddall M E. and Budinoff R. B. 2005.  DNA-barcoding evidence for widespread  introductions of a leech from the South American  Helobdella triserialis complex. Conservation  Genetics. 6: 467-472.

Siddall, M. E, Budinoff, R. B., and Borda, E.  2005. Phylogenetic evaluation of systematics and  biogeography of the leech family Glossphoniidae.  Invertebrate Systematics, 19: 105-112.

Siddall, M.E. and Bowerman, J.  2006. A new  species of leech, Placobdella burresonae N. Sp.  (Annelida: Hirudinida: Glossiphoniidae) from Rana  pretiosa (Amphibia: Ranidae) in Oregon. Journal  of Parasitology 92: 855-857.

Siddall, M. E. and Aguado, M. T. 2006. Molecular  phylogenetic evidence of a haplosporidian  parasite infecting the polychaete Syllis  nipponica (Imajima, 1966).  Parasitology  Research. 99:309-12

Siddall, M. E., Bely, A. E., and Borda, E. 2006.  Hirudinida. Chapter 9: Reproductive Biology and  Phylogeny of Annelida, Rouse, G and Pliejel, F  (eds.) Enfield, NH. Pp. 393-429.

Siddall, M. E., Worthen, P. L. , Johnson, M., and  Graf, J. 2007. Novel role for Aeromonas jandaei  as digestive-tract symbiont of North American  medicinal leeches.  Applied Environmental  Microbiology, 73: 655-658.

Silverman ED, R.R. Veit, G.A. Nevitt.  2004. Nearest neighbors as foraging cues: Information transfer in a patchy environment. Marine Ecology Progress Series 277: 25-36

Simmons, N. B., and T. Conway. 2003. Evolution of ecological diversity in bats.  Pp. 493- 535 in: Bat Ecology (T. Kunz and M. B. Fenton, eds), University of Chicago Press.

Simmons, N. B. 2005. Order Chiroptera. Pp. 312-529 in: Mammal species of the World: a taxonomic and geographic reference, Third Edition, Volume 1 (D. E. Wilson and D. M Reeder, eds.).  Johns Hopkins University Press.

Simmons, N. B.  2005. Chiroptera. Pp. 159-174 in: Origins of the major clades of  placental mammals (K. Rose and D. Archibald, eds.). Johns Hopkins University Press.

Simmons, N. B.  2005.  An Eocene big bang for bats.  Science 307: 527-528.

Simmons, N. B., and R. S. Voss.  In press.  Collection, preparation, and fixation of specimens and tissues.  In: Ecological and behavioral methods for the study of bats, 2nd Edition (T. H. Kunz and S. Parsons, eds.). Johns Hopkins University Press.

Smith, W. L., and W. C. Wheeler. 2004. Polyphyly of the mail-cheeked fishes (Teleostei: Scorpaeniformes): evidence from mitochondrial and nuclear sequence data, Mol. Phyl. Evol., 32:627-646.

Smith, W. L. and Wheeler, W. C. 2006. Venom evolution widespread in fishes: A phylogenetic roadmap for the bioprospecting of piscine venoms. J. Heredity 97:206-217.

Smith, W. L., Smith, K.R., and Wheeler, W. C. Novel mitochondrial intergenic spacer in fairy basslets (Serranidae:Anthiinae) and the simultaneous analysis of nucleotide and genomic rearrangement data. Am. Mus. Novitates, in press.

Soucier, C.P. and J. Basil.  2007.  Detection of underwater vibrations by the Chambered Nautilus, Nautilus pompilius. American Journal of Malacology. (In press)

Sparks, J.S. & M.L.J. Stiassny. 2005. Madagascar’s Freshwater Fishes: An imperiled treasure. In: THIEME ET AL. (eds). Freshwater ecoregions of Africa: A conservation assessment. 62-70 pp. Island Press, Washington, DC, USA.

Song, M, S. Boissinot, R.M. Haralick, I.T. Phillips. 2003. Estimating recombination rate distribution by optimal quantization. Proceedings of IEEE Computational Systems Bioinformatics Conference 2003: 403-406.

Song M and S. Boissinot.  2007. Selection against LINE-1 retrotransposons results principally from their ability to mediate ectopic recombination. Gene 390 (1-2): 206-213.

Sparks, J. S. & M.L.J. Stiassny. 2007.  Introduction aux poissons d’eaux douces. Pp. 1-28. In: S. M. Goodman and J. P. Benstead (eds.), Histoire Naturelle de Madagascar. Muséum national d’Histoire naturelle (MNHN), Paris.

Sparks, J.S. & M.L.J. Stiassny. Introduction to the Freshwater Fishes. Chapter 9, 849-863.  In: The Natural       History of Madagascar. S. M. Goodman And J. P. Benstead (eds), Chicago University Press.

Steiper, M.E. and M. Ruvolo. 2003. Genetic sex identification of orangutans. Anthropologischer Anzeiger 61: 1 - 5.

Steiper, M.E. and M. Ruvolo. 2003. New World Monkey phylogeny based on X-linked G6PD DNA sequences. Molecular Phylogenetics and Evolution 27: 121-130.

Steiper, M.E., Young, N. M., and T. Y. Sukarna. 2004. Genomic data support the hominoid slowdown and an Early Oligocene estimate for the hominoid-cercopithecoid divergence. Proceedings of the National Academy of Sciences of the United States of America 101 (49):17021-17026.

Steiper, M.E. and N.M. Young. 2006. Primate molecular divergence dates. Molecular Phylogenetics and Evolution 41:384-394.

Steiper, M.E., Wolfe, N.D., Karesh, W.B., Kilbourn, A.M., Bosi, E.J., and M. Ruvolo. 2005. The population genetics of the alpha-2 globin locus of orangutans (Pongo pygmaeus). Journal of Molecular Evolution 60: 400-408.

Steiper, M.E. 2006 Population history, biogeography, and taxonomy of orangutans (Genus: Pongo) based on a population genetic meta-analysis of multiple loci. Journal of Human Evolution 50: 509-522.

Steiper, M.E., Wolfe, N.D., Karesh, W.B., Kilbourn, A.M., Bosi, E.J., and M. Ruvolo. 2006. The phylogenetic and evolutionary history of a novel alpha-globin-type gene in orangutans (Pongo pygmaeus). Infection, Genetics and Evolution 6: 277-286.

Steiper, M.E., Parikh, S.J., and J.M. Zichello. Phylogenetic Analysis of the Promoter Region of the CD40L Gene in Primates and other Mammals. Infection, Genetics and Evolution. (In press)

Sterling, E.J. 2003. Daubentonia madagascariensis. In: The Natural History of Madagascar. Edited by S.M. Goodman and J.P. Benstead. pp. 1348-1351. Chicago, IL: University of Chicago Press.

Sterling, E.J., E.L. Bynum, M.F. Laverty, I.J. Harrison, S. Spector, and E.A. Johnson. 2003. Why Should You Care About Biological Diversity? A SENCER Backgrounder. SENCER: Science Education for New Civic Engagements and Responsibilities.

Sterling, E.J., M.M. Hurley, and R. Bain. 2003. Vietnam’s secret life. Natural History 112(2): 50-59.

Sterling, E.J. and M.M. Hurley. 2005. Conserving biodiversity in Vietnam: applying biogeography to conservation research. Proceedings of the California Academy of Sciences 56, Supplement I (9)90–105.

Sterling, E.J. and E.M. McCreless. 2006. Adaptations in the Aye-aye: A Review. In: Lemurs: Ecology and Adaptation. Edited by L. Gould and M.L. Sauther. pp. 159-184. Springer.

Sterling, E.J., N.Bynum,  J.P. Gibbs and A.L. Porzekanski. 2006. Construyendo
capacidades para la consevración de la biodiversidad en países tropicales:
la Red de Educadores y Profesionales de la Conservación (REPC). Ambiente y
Desarrollo (Chile) 11 (2): 40-46.

Sterling, E.J., M.M. Hurley, A. Tordoff, and J.C. Eames. 2006. Case Study: Vietnam Conservation Areas. In: Fundamentals of Conservation Biology, 3rd Edition, Edited by Malcolm Hunter, Jr. (ed.) Malden, MA: Blackwell Science.

Sterling, E.J., M.M. Hurley and Le Duc Minh. 2006. The Natural History of Vietnam. New Haven, CT: Yale University Press.

Sterling, E.J., J. Lee and T. Wood. 2007. Conservation education in zoos: an emphasis on behavioral change. In: Zoos in the 21st Century: Catalysts for Conservation? Edited by Alexandra Zimmerman et al. Cambridge University Press.

Sterling, E.J. 2007. Blue Planet Blues. Natural History (November 2007) pp. 29-31.

Sterling, E.J. and M. Camhi 2007.  Sold Down the River. Natural History (November 2007) pp. 40-47.

Sterling, E.J., M.M. Hurley, and Le Duc Minh.  2007.  Lich Su Tu Viet Nam. Hanoi: Lotus Press.

Sterling, E.J. Conservation Genetics in the Age of Genomics. Edited by George Amato, Rob DeSalle, and Howard Rosenbaum. Columbia University Press.  in press.

Sterling, E.J. and E.E. McCreless. Daubentonia madagascariensis, in The Living Primates. Edited by N. Rowe. Pogonias Press, East Hampton, NY.  in press.

Stewart G.M. and N.S. Fisher.  2003.  Experimental studies on the accumulation of polonium-210 by marine phytoplankton. Limnology and Oceanography 48(3): 1193-1201

Stewart G.M. and N.S. Fisher.  2003.  Bioaccumulation of polonium-210 in marine copepods. Limnology and Oceanography 48(5): 2011-2019.

Stewart, G.M., N.S. Fisher, J.K. Cochran, S.W. Fowler, and P. Masqué.  2004.  The bioaccumulation of 210Po in plankton and its potential use as an organic carbon tracer at the DYFAMED site in the Northwestern Mediterranean.  Rapp. Comm. Int. Mer. Medit. 37: 245.

Stewart, G.M., J.K. Cochran, P. Masqué, R.A. Armstrong, J.-C. Miquel, A. Rodriguez, S.W. Fowler, M. Peterson, and N.S. Fisher.  2004.  210Po and 210Pb concentrations, fluxes, particle settling velocities, and organic carbon at the DYFAMED site, Northwestern Mediterranean. Rapp. Comm. Int. Mer. Medit. 37: 246.

Stewart G.M., S.W. Fowler, J.L. Tessyie, O. Cotret, and N.S. Fisher.  2005.  Contrasting the transfer of polonium-210 and lead-210 across three trophic levels in the marine plankton. Marine Ecology Progress Series 290: 27-33

Stewart G.M., J.K. Cochran, J. Xue, C. Lee, S. Wakeham, R.A. Armstrong, P. Masque, and J.C. Miquel.  2007.  Exploring the connection between Po-210 and organic matter in the northwestern Mediterranean. Deep Sea Research I 54: 415 – 427.

Stewart G.M, P. Masque, J.K. Cochran, J.C. Miquel, J. Szlosek, A.M. Rodriguez, S.W. Fowler, B. Gasser, and D.J. Hirschberg. 2007. Comparing POC flux estimates from 210Po/210Pb water column profiles with estimates from sediment traps and 234Th/238U profiles, 0-200 m northwest Mediterranean. Deep Sea Research I doi: 10.1016/j.dsr.2007.06.005

Stiassny, M.L.J., Wiley, E.O., G.D. Johnson And M.R. De Carvalho. 2004. Gnathostome fishes. In: M.J. Donaghue & J. Cracraft (eds). Assembling the Tree of Life. Oxford University Press, New York.

Stiassny, M.L.J., and S.A. Schaefer. 2005. Rhabdalestes aeratis, new species (Characiformes: Alestidae): first occurrence of the genus from the Middle Congo River basin.  Ichthyological Exploration of Freshwaters, 16(3):271-278.

Stiassny, M.L.J. & S.A. Schaefer. 2005. New species of Rhabdalestes Hoedeman, 1951 (Characiformes: Alestidae): first occurrence of the genus from the Middle Congo River basin. Ichthyological Explorations of Freshwater. 16(3): 271-278.

Stiassny, M.L.J., R.C. Schelly & U.K. Schliewen. 2006 A new species of Raiamas (Teleostei: Cyprinidae) from the Lower Congo River, with a phylogenetic assessment of       the generic limits of the predatory cyprinid genera Opsaridium, Raiamas and Leptocypris.      Copeia 2006(3): 370-377.

Stiassny, M.L.J. & J.S. Sparks. 2006.  Phylogenetic and taxonomic revision of the endemic Malagasy genus Ptychochromis (Teleostei: Cichlidae), with description of five new species and a diagnosis for Katria gen. nov. American Museum Novitates, 3535: 1-55.

Stiassny, M.L.J. & A. Getahun. 2007. On overview of labeonin relationships and the phylogenetic placement of the Afro-Asian genus Garra Hamilton, 1922 (Teleostei: Cyprinidae), with the description of five new species of Garra from Ethiopia and a key to all African species. Zoological Journal of the Linnean Society, 150, 41-83.

Stiassny, M.L.J. & U.K. Schliewen. 2007.  Congochromis, a new cichlid genus (Teleostei: Cichlidae) from central Africa, with a description of a new species from the upper Congo River, Democratic Republic of Congo. American Museum Novitates, 3576, 1-14.

Stiassny, M.L.J., Teugels, G.G. And C.D. Hopkins. 2008. Poissons d’Eaux Douces et Saumâtres de Basse Guinée, l’Afrique Ouest-Centrale : The Fresh and Brackish Water Fishes of Lower Guinea, west-Central Africa.  IRD Éditions, Paris.

Stiassny, M.L.J and V. Mamonekene. Micralestes (Teleostei, Alestidae) of the Lower Congo River, with a description of a new species endemic to the Lower Congo River rapids in the Democratic Republic of Congo. Zootaxa  in press

Stoeck, M, C. Moritz, M.J. Hickerson, D. Frynta, T. Dujsebayeva, V. Eremchenko, J. R. Macey, T. Papenfuss, and D. Wake. 2006 Evolution of mitochondrial relationships and biogeography of palearctic green toads (Bufo viridis subgroup) with insights into their genomic plasticity. Mol. Phy. Evol 663-689

Sundaram, B, A.C. Poje, R.R. Veit & H. Nganguia. 2006. Acoustical dead zones and the spatial aggregation of whale strandings. Journal of Theoretical Biology, 238, p764-770.

Terleph, T. and Moller, P. 2003. Effects of social interaction on the electric organ discharge in a mormyrid fish, Gnathonemus petersii Günther 1862 (Mormyridae, Teleostei). J. Exp. Biol. 206:2355-2362.

Thieme, M.L., Abell, R.A., Stiassny, M.L.J.., Skelton, P. H., Lehner, B. et al. 2005. Freshwater ecoregions of Africa and Madagascar: A conservation assessment. 431pp.  Island Press, Washington, DC, USA. (ISBN 1-55963-365-4)

Toner, M & A.C. Poje.  2004. Lagrangian velocity statistics of directed launch strategies in a Gulf of Mexico model., Nonlinear Processes in Geophysics, 11, p35-46.

Toner, M, A.D. Kirwan, A.C. Poje, F. Muller-Karger & C.K.R.T. Jones, J.  2003. Chlorophyll dispersal by eddy-eddy interactions in the Gulf of Mexico. M. Geophysical Research, 108, C4, 3105)

Tong, I,Y.-S., S.-Y. Ting, J. Meng, Q. Li, Y.-Q. Wang, P. L. Koch, W. C. Clyde, G. J. Bowen, and J. A. Shiebout.  2007.  A possible artiodactyl species from the Paleocene of the Chijiang Basin, Jiangxi, China. Vertebrata PalAsiatica.

Tong, Y.-S., J.-W. Wang, and J. Meng. 2004. Olbitherium millenariusum, a new perissodactyl-like archaic ungulate (Mammalia) from the early Eocene Wutu Formation, Shangdong. Vertebrata PalAsiatica. 42: 27-38.

Torn, M.S., Davis, S., Bird J.A., Shaw, M.R. and M. Conrad. 2003. Automated analyses of 13C/12C ratios in CO2 and dissolved inorganic carbon for ecological and environmental applications. Rapid Commun. Mass Spectrom. 17:2575-2582.

Tozer, D. C., K. F. Abraham and E. Nol. 2006. Improving the accuracy of counts of wetland birds at the point scale. Wetlands 26:518-527.

Tozer, D. C., K. F. Abraham, and E. Nol. 2007. Short call-broadcasts fail to detect nesting Ixobrychus exilis (Least Bittern).  Northeastern Naturalist 14:00-00. in press.

Turner, W., S. Spector, N. Gardiner, M. Fladeland, E.J. Sterling, and M. Steininger. 2003. Remote sensing for biodiversity science and conservation. Trends in Ecology and Evolution 18(6):306-314.

Tshibwabwa, S.M., M.L.J. Stiassny & R.C. Schelly. 2006 Description of a new species of Labeo (Teleostei: Cyprinidae) from the Lower Congo River. Zootaxa, 1224: 33-44.

Vater, M., J. Meng, and R. Fox. 2004. Hearing organ evolution and specialization - early and later mammals; pp 256-288 In: “Evolution of the vertebrate auditory system” G. A. Manley, A, N. Popper, and R. R. Fay (editors). Springer Handbook of Auditory Research. New York: Springer.

Veit, R.R.  2006.  European Turtle-Dove Streptopelia turtur in Massachusetts.  North American Birds 60:182-183.

Veit, R.R. 2006.  Identification criteria for young female Bullock’s and Baltimore Orioles: An evaluation based on museum skins.  New Jersey Birds 32: 22-25.

Veit, R.R., K.D. Hyrenbach and M.C. Martin. 2007.  Records of rare birds in the Indian Ocean during the austral summers of 2003–05.  Bulletin of the British Ornithological Club 127(1): 27-34.

Vignoli, V. and Prendini, L. (in press). A new species of Akentrobuthus Lamoral, 1976 (Scorpiones: Buthidae) from the Republic of Benin. Journal of Afrotropical Zoology.

Volschenk, E.S. and Prendini, L. Aops oncodactylus gen. et sp. nov., the first troglobitic urodacid (Chelicerata: Scorpiones), with a re-assessment of cavernicolous, troglobitic and troglomorphic scorpions. Invertebrate Systematics. (in press).

Volschenk, E.S., Mattoni, C.I. and Prendini, L.. Comparative anatomy of the mesosomal organs of scorpions (Chelicerata, Scorpiones), with implications for the phylogeny of the order. Zoological Journal of the Linnean Society. (in press).

Voss, R.S. 2003. A new Ecuadorean species of Thomasomys (Rodentia: Muridae) with remarks on mammalian diversity and biogeography in the Cordillera Oriental.  Am. Mus. Novitates 3421: 47 pp.

Voss, R.S., and S.A. Jansa. 2003. Phylogenetic studies on didelphid marsupials II.  Nonmolecular data and new IRBP sequences: separate and combined analyses of didelphine relationships with denser taxon sampling.  Bull. Am. Mus. Nat. Hist. 276: 82 pp.

Voss, R.S., T. Tarifa, and E. Yensen.  2004.  An introduction to Marmosops (Marsupialia: Didelphidae), with the description of a new species and notes on the taxonomy and distribution of other Bolivian forms. Amer. Mus. Novitates 3466: 40 pp.

Voss, R.S., A.L. Gardner, and S.A. Jansa. 2004.  On the relationships of “Marmosa” formosa Shamel, 1930 (Marsupialia: Didelphidae), a phylogenetic puzzle from the Chaco of northern ArgentinaAmerican Museum Novitates 3442: 1-18. 

Voss, R.S., D.P. Lunde, and S.A. Jansa. 2005. On the contents of Gracilinanus Gardner and Creighton, 1989, with the description of a previously unrecognized clade of small didelphid marsupials.  Amer. Mus. Novitates 3482: 1–34.

Wahlert, John H., William W. Korth, and Malcolm C. McKenna.  2006.  “The skull of Rapamys (Ischyromyidae, Rodentia) and description of a new species from the Uintan (late middle Eocene) of Montana.”  Palaeontographica A., 277 (Lieferung 1/6): 39-51

Wahlert, John H.  2004  “The skull and dentition of Eumys elegans from the Oligocene of North Dakota.”  Bulletin of the Carnegie Museum of Natural History, 36 (honoring Malcolm C. McKenna): 335-348.

Waldman, J.R.  2003.  Introduction to the shads.  American Fisheries Society Symposium Series 35:3-9.

Waldman, J.R., and K.E. Limburg.  2003.  The world’s shads: summary of their status, conservation, and research needs.  American Fisheries Society Symposium Series 35:363-369.

Waldman, J.R., C. Grunwald, N.K. Roy, and I.I. Wirgin.  2004.  Mitochondrial DNA analysis indicates sea lamprey (Petromyzon marinus) indigenous to Lake Ontario.  Transactions of the American Fisheries Society 133:950-960.

Waldman, J.R.  2004.  Definition of stocks: an evolving concept.  Pages 5-14 in S. X. Cadrin, K. Friedland, and J. R. Waldman, editors.  Stock Identification Methods, Elsevier, San Diego.

Waldman, J.R.  2004.  Meristics.  Pages 191-201 in S. X. Cadrin, K. Friedland, and J. R. Waldman, editors.  Stock Identification Methods, Elsevier, San Diego.

Waldman, J.R.  2006.  The diadromous fish fauna of the Hudson River: life histories, conservation concerns, and research avenues.  Pages 171-188 in J.S. Levinton and J.R. Waldman, editors.  The Hudson River Estuary, Cambridge University Press.

Waldman, J.R., K.E. Limburg, and D.L. Strayer.  2006.  The Hudson River environment and its dynamic fish community.  American Fisheries Society Symposium Series 51:1-7.

Waldman, J.R., T. Lake, and R.E. Schmidt.  2006.  Biodiversity and zoogeography of Hudson Estuary Fishes.  American Fisheries Society Symposium Series 51:129-150.

Waldman, J.R., C. Grunwald, and I. Wirgin.  2006.  Evaluation of the native status of sea lamprey Petromyzon marinus in Lake Champlain based on mitochondrial DNA sequencing analysis.  Transactions of the American Fisheries Society 135:1076-1085.

Waldman, J.  2007. The world’s diadromous fishes: Resetting shifted baselines.  State of the Wild: A Global Portrait of Wildlife, Wildlands, and Oceans 2007, Wildlife Conservation Society, New York.

Waldman, J.R., P. Doukakis, and I. Wirgin.  2008. Molecular analysis as a conservation tool for monitoring the trade of North American sturgeons and paddlefish.  Journal of Applied Ichthyology. In press.

Walker, I. D., D. M. Dawson, T. Flash, F. W. Grasso, R. T. Hanlon, B. Hochner.  2006.  “Continuum robot arms inspired by cephalopods.” Proceedings of the 2005 SPIE, Unmanned Ground Vehicle Technology IV, Orlando, Florida, USA.

Wallace, W.G., Estephan, A. 2004.  Differential susceptibility of horizontal and vertical swimming activity to cadmium exposure in a gammaridean amphipod (Gammarus lawrencianus), Aquat. Toxicol. 69:289-297

Wallace, W.G., Lee, B-G, Luoma, S.N. 2003. Subcellular compartmentalization of Cd and Zn in two bivalves. I. Significance of metal-sensitive fractions (MSF) and biologically detoxified metal (BDM). Mar. Ecol. Prog. Ser. 249:183-197

Wallace, W.G., Luoma, S.N. 2003. Subcellular compartmentalization of Cd and Zn in two bivalves. II. Significance of trophically available metal (TAM). Mar. Ecol. Prog. Ser. 257: 125-137

Waltari, E., R. J. Hijmans, A. Townsend Peterson, A. S. Nyári, S. L. Perkins, and R. P. Guralnick.  2007. Locating Pleistocene refugia: comparing phylogeographic and ecological niche model predictions. PLoS One. 2:e563.

Wang, Y.-Q., J. Meng, X.-J. Ni, and C.-K. Li. 2007. Major events of Paleocene mammal radiation in China. Geological Journal 42: 415—430.

Wang, Y.-Q., J. Meng, X.-j. Ni, and C.-k. Li. 2006. Paleogene mammal radiation in China. In: Originations and radiations-evidences from the Chinese fossil record. Pp 735-755 In Rong J et al. (eds.). Beijing: Science Press (in Chinese with English abstract).

Weksler, M., A.R. Percequillo, and R.S. Voss.  2006.  Ten new genera of oryzomyine rodents (Cricetidae: Sigmodontinae).  American Museum Novitates 3537: 1-29.

Wesley GD and J. J. Flynn.  2003.  A revision of Tapocyon (Carnivoramorpha), including analysis of the first cranial specimens and identification of a new species.  Journal of Paleontology, v. 77, no. 4, p. 769-783.

Wesley-Hunt, GD and J.J. Flynn. 2005.  Phylogeny of the Carnivora: Basal relationships among the carnivoramorphans, and assessment of the position of “Miacoidea” relative to crown-clade Carnivora.  Journal of Systematic Palaeontology, vol. 3, no. 1, p. 1-28.

Westergren, S. and Siddall, M. E. 2004. Two new  Species of Salifid Leeches (Arhynchobdellida:  Erpobdelliformes: Salifidae) from South Africa  and Madagascar. American Museum Novitates, 3457

Wheeler, W. C. 2003. Search-Based Optimization. Cladistics, 19:348-355.

Wheeler, W. C. 2003. Implied Alignment: A Synapomorphy-Based Mulitple Sequence Alignment Method. Cladistics, 19:261-268.

Wheeler, W. C. 2003. Iterative pass optimization. Cladistics, 19:254-260.

Wheeler, W. C., G. Giribet, and G. D. Edgecombe. 2004. “Arthropod Systematics: The Comparative Study of Genomic, Anatomical, and Paleontological Information.” pp. 281-295, Assembling the Tree of Life. J. Cracraft and M. J. Donoghue eds. Oxford University Press, Oxford.

Wheeler, W. C., D. Janies, and J. De Laet. 2004. “DNA sequence alignment and parallel processing.” Pp247-250, 2004 McGraw-Hill Yearbook of Science & Technology.

Wheeler, W. C. 2005. “Alignment, Dynamic Homology, and Optimization.” Pp. 71-80 in Parsimony, Phylogeny, and Genomics. V. A. Albert eds. Oxford University Press, Oxford.

Wheeler, W. C. 2006. Dynamic homology and the likelihood criterion. Cladistics 22:157-170.

Wheeler, W. C., M. J. Ramírez, L. Aagesen, and S. Schulmeister. 2006. Partition-Free Congruence Analysis: Implications for Sensitivity Analysis. Cladistics 22:26-263..

Wheeler, W. C. 2007. Chromosomal Character Optimization. Mol. Phyl. Evol. 44:1130-1140.

Wheeler, W. C. 2007. “The analysis of molecular sequences in large data sets: where should we put our effort?” Pp. 113-128, In Trevor R. Hodkinson and John A. N. Parnell eds., Reconstructing the Tree of Life: Taxonomy and Systematics of Species Rich Taxa. Systematics Association, Oxford University Press.

Wible, J.R., M. J. Novacek, and G. W. Rougier. 2004  New data on the skull and dentition in the Mongolian Late Cretaceous eutherian mammal Zalambdalestes. Bulletin American Mus. Nat. Hist. 281: 1-144.

Wible, J.R., M. J. Novacek, and G. W. Rougier. 2004  New data on the skull and dentition in the Mongolian Late Cretaceous eutherian mammal Zalambdalestes. Bulletin American Mus. Nat. Hist. 281: 1-144.

Wible, J. R., G. W. Rougier, and M. J. Novacek. 2005. Anatomical evidence for superordinal/ordinal eutherian taxa in the Cretaceous. Pp. 15-36, in The Rise of Placental Mammals: Origins and Relationships of the Major Extant Clades (K. D. Rose and J. D. Archibald, eds.). Johns Hopkins University Press, Baltimore.

Witherspoon, D.J., E.E. Marchani, W.S. Watkins, C.T. Ostler, S.P. Wooding, B.A. Anders, J.D. Fowlkes, S. Boissinot, A.V. Furano, A.R. Rogers, M.A. Batzer and L.B. Jorde. 2006. Analysis of human population genetic structure and diversity comparing polymorphic L1 (LINE-1) and Alu insertions. Human heredity 62 (1): 30-46.

Wirgin, I., and J.R. Waldman.  2004.  Use of nuclear DNA in stock identification: single-copy and repetitive sequence markers.  Pages 321-359 in S. X. Cadrin, K. Friedland, and J. R. Waldman, editors.  Stock Identification Methods, Elsevier, San Diego.

Wirgin, I., and J.R. Waldman.  2004.  Resistance to contaminants in North American fish populations.  Mutation Research 552:73-100.

Wirgin, I., D. Currie, N. Roy, L. Maceda, and J.R. Waldman.  2005.  Introgression of nuclear DNA (nDNA) alleles of stocked Atlantic coast striped bass with the last remaining native Gulf of Mexico population.  North American Journal of Fisheries Management 25:464-474.

Wirgin, I., C. Grunwald, E. Carlson, J. Stabile, D.L. Peterson, and J. Waldman. 2005.  Range-wide population structure of shortnose sturgeon Acipenser brevirostrum based on sequence analysis of the mitochondrial DNA control region.  Estuaries 28:406-421.

Wirgin, I., and J. Waldman.  2006.  Bioaccumulation and toxicities of aromatic hydrocarbon contaminants at different trophic levels of the Hudson River Ecosystem.  Pages 1552-1568 in W.N. Rom, editor.  Environmental and Occupational Medicine, 4th Edition, Lippincott-Raven Publishers.

Wirgin, I., A.I. Kovach, L. Maceda, N.K. Roy, J. Waldman, D.L. Berlinsky.  2007.  Stock identification of Atlantic cod in U.S. waters using microsatellite and single nucleotide polymorphism DNA analyses.  Transactions of the American Fisheries Society 136:375-391.

Wirgin, I., C. Grunwald, J. Stabile, and J. Waldman.  2007 Genetic evidence for mid-Atlantic coast relict Atlantic sturgeon stocks.  Transactions of the American Fisheries Society.  In press.

Wirkner, C.S. and Prendini, L. 2007. Comparative morphology of the hemolymph vascular system in scorpions – a survey using corrosion casting, MicroCT and 3D-reconstruction. Journal of Morphology 268: 401413.

Wright, T.F., Brittan-Powell, E.F. , Dooling R.J., and Mundinger, P.C. 2004. Sex-linked inheritance of hearing and song in the Belgian waterslager canary. Proceedings of the Royal Society of London B (Suppl) 271:s409-s412.

Wu, W.-y., Ye, J., and Meng, J. 2003. The discovery of Pliopithecus from Northern Junggar Basin of Xinjiang. Vertebrata PalAsiatica 41: 76-84.

Wu, W.-Y., J. Meng,  J. Ye, and X.-J. Ni. 2004. Propalaeocastor (Rodentia, Mammalia) from the Early Oligocene of Burqin Basin Xinjiang. American Museum Novitates 3461, 16 pp.

Wu, W.-Y., J. Meng, J. Ye, X.-J. Ni. 2006. The first finds of eomyids (Rodentia) from North Junggar Basin, China. Beiträge zur Paläontologie 30: 469-479.

Ye, J., J. Meng, and W.-Y. Wu. 2003. Oligocene/Miocene beds and faunas from Tieersihabahe in the Northern Junggar Basin of Xinjiang. American Museum Bulletin 279: 568-585.

Ye, J., J. Meng, and W.-Y. Wu.  2003. Discovery of Paraceratherium in the northern Jungur Basin of Xinjiang. Vertebrata PalAsiatica. 41: 220-229.

Ye, J., W.-Y. Wu, and J. Meng. 2005. Anchitherium (Perissodactyla, Mammalia) from the Halamagai Formation of Northern Junggar Basin, Xinjiang. Vertebrata PalAsiatica 43: 100-109.

Ye, J., J. Meng, W.-Y. Wu, and X.-J. Ni. 2005. Late Eocene-early Oligocene lithological and biological stratigraphy in the Burqin region of Xinjiang. Vertebrata PalAsiatica 43: 49-60.

Yoder AD and J.J. Flynn.  2003.  Origin of Malagasy Carnivora.  IN: Goodman, S.M. and Benstead, J. (eds.), The Natural History of Madagscar, University of Chicago Press, Chicago, pp. 1253-1256 (plus references in composite Mammals reference list on p. 1390-1422).

Yoder, AD, M.M. Burns, S. Zehr, T. Delefosse, G. Veron, S.M. Goodman, and J.J. Flynn.  2003.  Single origin of Malagasy Carnivora from an African ancestor.  Nature, v. 421, p. 734-737.

Zaikowski,L, KT McDonnell, RF Rockwell and F Rispoli.  2008.  Temporal and spatial variations in dissolved oxygen on New York South Shore Estuary tributaries: Carmans, Patchogue, and Swan Rivers.  Estuaries and Coasts (in press).

Zhang Z, Gu J, Gu X.  2004.  How much expression divergence after yeast gene duplication could be explained by regulatory motif evolution? Trends in Genetics. 20(9): 403-407.

Zhou H, Gu J, Lamont S J, Gu X.  2007.  Evolutionary analysis for functional divergence of Toll-like receptor gene family and altered functional constraints. Journal of Molecular Evolution 65(2):119-123.

 



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