Link to Graduate Center Home Page Ph.D. Program in Biology
Ecology, Evolutionary Biology, and Behavior
Link to the Ph.D. in Biology Homepage
The Benefits of Choosing CUNY-5 years with annual stipend, full tuition waiver, health insurance, and Diversityenhancement. Click here to learn more.

EEB Specialization
Room 4315
The Graduate Center
The City University of New York
365 Fifth Avenue
New York, NY 10016-4039

Phone: (212) 817-8100


 


Faculty Publications from 2003 to 2007

CLICK TO DOWNLOAD LIST AS PDF

(faculty member's name in bold)

Abraham, K. F., R. L. Jefferies, and R. F. Rockwell. 2005. Goose-induced changes in vegetation and land cover between 1976 and 1997 in an Arctic coastal marsh.  Arctic, Antarctic and Alpine Research 37(3):269-275.

Abraham, K.F., R.L. Jefferies, and R.T. Alisauskas. 2005. The dynamics of landscape change and snow geese in mid-continent North America. Global Change Biology 11:841-855.

Abraham, K. F. and C. E. Keddy. 2005.  The Hudson Bay Lowland: a unique wetland legacy.  Chapter 4, Pages 118-148 in Fraser, L.H. and P.A. Keddy (eds.) 2005. The World’s Largest Wetlands: Their Ecology and Conservation. Cambridge University Press, Cambridge.

Amorim, D. S. and D. Grimaldi. 2006.  Valeseguyidae, a new family of Diptera in the Scatopsoidea, with a new genus in Cretaceous amber from Myanmar.  Systematic Entomology 29: 1-9.

Anderson, R. P. 2003. Real versus artefactual absences in species distributions: tests for Oryzomys albigularis (Rodentia: Muridae) in Venezuela. Journal of Biogeography, 30:591–605.

Anderson, R. P. 2003. Taxonomy, distribution, and natural history of the genus Heteromys (Rodentia: Heteromyidae) in western Venezuela, with the description of a dwarf species from the Península de Paraguaná. American Museum Novitates, 3396:1–43.

Anderson, R. P., D. Lew, and A. T. Peterson. 2003. Evaluating predictive models of species’ distributions: criteria for selecting optimal models. Ecological Modelling, 162:211–232.

Anderson, R. P. and E. Martínez-Meyer. 2004. Modeling species’ geographic distributions for conservation assessments: an implementation with the spiny pocket mice (Heteromys) of Ecuador. Biological Conservation, 116:167–179.

Anderson, R. P., A. T. Peterson, and S. L. Egbert. 2006. Vegetation-index models predict areas vulnerable to purple loosestrife (Lythrum salicaria) invasion in Kansas. Southwestern Naturalist, 51:471–480.

Anderson, R. P. and R. M. Timm. 2006. A new montane species of spiny pocket mouse (Rodentia: Heteromyidae: Heteromys) from northwestern Costa Rica. American Museum Novitates, 3509:1–38.

Anderson, R. P., M. Weksler, and D. S. Rogers. 2006. Phylogenetic analyses of spiny pocket mice (Heteromyidae: Heteromyinae) based on allozymic and morphological data. Journal of Mammalogy, 87:1218–1233.

Anderson, R. P. and S. A. Jansa. 2007. Genetic comparisons between Heteromys desmarestianus and the newly described H. nubicolens (Rodentia: Heteromyidae) in northwestern Costa Rica. Mammalian Biology, 72:54–61.

Antoine, P-O, D. De Franceschi, J.J. Flynn, A. Nel, P. Baby, M. Benammi, Y. Calderón, N. Espurt, A. Goswami, and R. Salas. 2006.   Western Amazonian Miocene amber with multiple organic inclusions.  Proceedings of the National Academy of Sciences USA, v. 103, no. 37, p. 13595-13600.

Aguado, M.T., Nygren, A. and SiddallM.E.  2007. Phylogeny of Syllidae (Polychaeta) based on  combined molecular analysis of nuclear and  mitochondrial genes. Cladistics.  In press

Arango, C. A., and W. C. Wheeler. 2007. Phylogeny of the sea spiders (Arthropoda, Pycnogonida) based on direct optimization of six loci and morphology. Cladistics 23:255-293.

Arva, N. C., Talbott, K. E., Okoro, D. R., Qiu, W. G. and Bargonetti, J. 2007. Disruption of the p53-Mdm2 complex by nutlin-3 reveals different cancer cell phenotypes. Ethnicity & Disease. (In press)

Asher, R. J., M. J. Novacek, and J. H. Geisler. 2003. Relationships of endemic African mammals and their fossil relatives based on morphological and molecular evidence. Journal of Mammalian Evolution, Vol. 10, 1/2: 131- 194.

Asher, R. J., J. Meng, M. C. McKenna, J. R. Wible, D. Dashzeveg, G. Rougier, and M. J. Novacek. 2005. Stem Lagomorpha and the Antiquity of Glires. Science 307: 1091-1094.

Asher, R. J., Meng, J., J. R. Wible, M. C. McKenna, G. W. Rougier, D. Dashzeveg, and M. J. Novacek. 2005.  Stem Lagomorpha and the antiquity of Glires. Science 307:1091-1094.

Attie, O.; Bruno, J. F.; Xu, Y.; Qiu, D.; Luft, B. J.; Qiu, W. G. 2007. Co-evolution of the outer surface protein C gene (ospC) and intraspecific lineages of Borrelia burgdorferi sensu stricto in the northeastern United States.  Infection, Genetics and Evolution.  7 (1):1-12

Austin CC and S. L. Perkins.  2006.  Parasites in a biodiversity hotspot: a survey of hematozoa and a molecular phylogenetic analysis of Plasmodium in New Guinea skinks.  Journal of Parasitology.  92:770-777.

Baker, M. B. 2004. Sex biased state dependence in natal dispersal in desert isopods, Hemilepistus reaumuri. Journal of Insect Behavior 17: 579-598

Baker, M. B., and S. Rao. 2004. Incremental costs and benefits shape natal dispersal; theory and an example using desert isopods, Hemilepistus reaumuri.  Ecology 85:1039-1051

Baker, M. B. 2005. Experience influences settling behavior in desert isopods, Hemilepistus reaumuri. Animal Behaviour 69: 1131-1138.

Baker, M. B., Alyokhin, A., Dastur, S. A., Porter, A. H., and Ferro, D. N. 2005. Sperm precedence in overwintered Colorado potato beetle (Coleoptera: Chrysomelidae) and its implications for insecticide resistance management. Annals of the Entomological Society of America 98: 989-995.

Baker, M. B., and A. H. Porter. Use of sperm precedence to infer the overwintering cost of resistance in Colorado potato beetle. Forest and Agricultural Entomology - in press

Baker, M. B., A. Alyokhin, A. H. Porter, D. N. Ferro, S. R. Dastur, and N. Galal. Persistence and inheritance of costs of resistance to imidacloprid in the Colorado potato beetle, Leptinotarsa decemlineata (Say). Journal of Economic Entomology – in press

Baldo, L., Prendini, L., Corthals, A. and Werren, J.. Wolbachia are present in southern African scorpions and cluster with supergroup F. Current Microbiology. (in press)

Barker, F. K., A. Cibois, P. Schikler, J. Feinstein, and J. Cracraft.  2004.  Phylogeny and diversification of the largest avian radiation.  Proc. Natl. Acad. Sci. 101:11040-11045.

Barrett, R.T., Chapdelaine, G., Anker-Nilssen, T., Mosbech A., Montevecchi, W.A., Reid, J.B., and Veit, R.R. 2006.  Seabird numbers and prey consumption in the North Atlantic.  ICES Journal of Marine Science 63: 1145-1158.

Barrett, R. T., Camphuysen, C. J., Anker-Nilssen, T., Chardine, J. W., Furness, R. W., Garthe, S., Hüppop, O., Leopold, M. F., Montevecchi, W. A., and Veit, R. R. 2008. Diet studies of seabirds: a review and recommendations. – ICES Journal of Marine Science in press.

Barrowclough, G. F.  2003.  Angel Falls, Venezuela.  Natural History 112(4A):56.

Barrowclough, G. F., and G. Hirons.  2003.  Owls. Pp. 322-335 in C. Perrins (ed.). Firefly Encyclopedia of Birds.  Firefly Books, Buffalo, NY.

Barrowclough, G. F., and R. M. Zink.  2004.  Ned K. Johnson, 1932 - 2003.  Ibis 146:567-568.

Barrowclough, G. F., J. G. Groth, L. A. Mertz, and R. J. Guti‚rrez.  2004.  Phylogeographic structure, gene flow and species status in blue grouse (Dendragapus obscurus).  Molecular Ecology 13:1911-1922.

Basil, J., Bahctinova, I., Kuroiwa, K., Lee, N., Preis, M., and C.  Soucier.  2005.  The role that tentacles and rhinophores play in odor-mediated behavior in Chambered Nautilus. Freshwater and Marine Behavior and Physiology 38 (3), pp. 209-221.

Benstead, J.P., Derham, P.H., Gattolliat, J.-L., Gibbon, F.-M., Loiselle, P.V., Sartori, M., Sparks, J.S. & M.L.J. Stiassny. 2003.  Conserving Madagascar’s freshwater  biodiversity. Bioscience 53(11): 1101-1111.

Berkov A. 2004. Lepuropetalaceae. In Smith N, Mori SA, Henderson A, Stevenson DW, & Heald SV, eds. Flowering Plants of the Neotropics. Princeton, NJ: Princeton University Press, p. 214.

Berkov A. 2004. Pterostemonaceae. In Smith N, Mori SA, Henderson A, Stevenson DW, & Heald SV, eds. Flowering Plants of the Neotropics. Princeton, NJ: Princeton University Press, p. 316.

Berkov A, Feinstein J, Centeno P, Small J, Nkamany M. 2007. Yeasts isolated from Neotropical wood-boring beetles in SE Peru. Biotropica 39: 530-538.

Bird, J.A., van Kessel, C. and W.R. Horwath. 2003. Stabilization of 13C-carbon and immobilization of 15N-nitrogen from rice straw in humic fractions. Soil Sci. Soc. Am. J. 67:806-815.

Bird, J.A. and M.S. Torn. 2006. Fine roots versus needles: A comparison of 13C and 15N dynamics in a Ponderosa pine forest soil. Biogeochemistry 79:361-382.

Birstein VJ, Ruban G, Ludwig A, Doukakis P, DeSalle R.  2005. The enigmatic Caspian Sea Russian sturgeon: how many cryptic forms does it contain?  Syst Biodiv 3:203-218

Birstein, VJ, Doukakis, P, DeSalle, R. 2005.  Baikal population of the Siberian sturgeon, Acipenser baerii:  caution for restocking programs. Journal of Heredity: (in press).

Blagoderov, V. and D. Grimaldi. 2004.  Fossil Sciaroidea (Diptera) in Cretaceous ambers, exclusive of Cecidomyidae, Sciaridae, and Keroplatidae.  American Museum Novitates 3433: 76 pp.

Blagoderov, V., D. Grimaldi, and N. Fraser. 2006.  How time flies for flies:  Diverse Diptera (Insecta) from the Late Triassic of eastern North America.  American Museum Novitates 3572:  39 pp.

Boissinot, S, C. Roos and A.V. Furano. 2004. Different rates of LINE-1 retrotransposons amplification and evolution in New World monkeys. J. Mol. Evol. 58: 122-130.

Boissinot, S., Entezam A, Young L, Munson P, and Furano AV. 2004. The insertional history of an active family of LINE-1 retrotransposons in humans. Genome Research 14: 1221-1231

Boissinot, S. and A.V. Furano. 2005. The recent evolution of human L1 retrotransposons. Cytogenetics and Genome Research 110(1-4): 402-406.

Boissinot, S., J. Davis, A. Entezam, D. Petrov and A.V. Furano. 2006. Fitness cost of LINE-1 (L1) activity in humans. Proc. Natl. Acad. Sci. USA 103 (25): 9590-9594.

Bonacum J, O'Grady PM, Kambysellis M, DeSalle R. 2005.  Phylogeny and age of diversification of the planitibia species group of the Hawaiian Drosophila.  Mol Phylogenet Evol. 2005 Oct;37(1):73-82.

Borda, E and Siddall, M. E. 2004. Review of the  evolution of life history strategies and  phylogeny of the Hirudinida (Annelida:  Oligochaeta). Lauterbornia 52: 5-25.

Borda, E. and Siddall, M. E. 2004.  Arhynchobdellida (Annelida: Oligochaeta:  Hirudinida): Phylogenetic Relationships and  Evolution. Mol. Phylog. Evol. 30: 213-225.

Borkent, A. and D. Grimaldi. 2004.  The earliest fossil mosquito (Diptera: Culicidae) in mid-Cretaceous Burmese amber.  Annals of the Entomological Society of America 97: 882-888.

Bowen, G. J., P. L. Koch, Meng J., Ye J., and S.-Y. Ting. 2005. Age and Correlation of Fossiliferous Late Paleocene-Early Eocene Strata of the Erlian Basin, Inner Mongolia, China. American Museum Novitates 3474: 1-26.

Bowen, G. J., T, J. Bralower, M. L. Delaney, G. R. Dickens, D. C. Kelly, P. L. Koch, L. R. Kump, J. Meng, L. C. Sloan, E. Thomas, S. L. Wing, J. C. Zachos. 2006. Eocene hyperthermal event offers insight into greenhouse warming. Eos, Vol. 87, No. 17.

Braun, C.B. and T. Grande.  2007.  Evolution of Peripheral Mechanisms for the Enhancement of Sound Reception.  In Popper, A.N., Fay, R.R, and Webb, J. (Eds).  Fish Bioacoustics.  Springer Handbook of Auditory Research (SHAR) volume  24.  in press.

Braun, C.B.  2007.  Evolution of mechanosensory and electrosensory lateral line systems.  Springer Encyclopedia of Neuroscience.  A. Butler, section editor.  in press.

Buckley, P.A. and S.S. Mitra. 2003 Williamson's Sapsucker, Cordilleran Flycatcher, and other long-distance vagrants at a Long Island, New York stopover site.  North American Birds 57: 292-304.

Buckley, P.A., S.S. Mitra, and E.S. Brinkley. 2004 Multiple occurrences of 'Dark-bellied Brant' (Branta (bernicla) bernicla) in North America. North American Birds 58: 180-185.

Budinoff RB Siddall AM and Siddall ME 2004.  Twelve variable microsatellite loci for the North  American medicinal leech, Macrobdella decora. Mol  Ecol Notes 4: 491-493

Buesseler K., Benitez-Nelson C., Moran S. B., Burd A., Charette M., Cochran J.K., Coppola L., Fisher N., Fowler S., Gardner W., Guo L., Gustafsson O., Lamborg C., Masque P., Miquel J-C., Passow U., Santschi P., Savoye N., Stewart G., Trull T.  2006.  An assessment of particulate organic carbon to thorium-234 ratios in the ocean and their impact on the application of 234Th as a POC proxy. Marine Chemistry 100: 213-233.

Burbrink, F. T. 2005 Inferring the Phylogenetic Position of Boa constrictor among the Boinae. Molecular Phylogenetics and Evolution 34:167-180.

Burbrink, F. T. and R. Lawson. 2007.  How and when did the Old World Rat Snakes  Cross Into the New World?  Molecular Phylognetics and Evolution. 43:173-189

Burbrink, F. T., B. I. Crother and R. Lawson. 2007. The destabilization of North  American Snake Taxonomy. Herpetological Review 38: 273-278.

Burbrink, F T., J. Rodriguez, and T. Castoe. 2008.  Molecular Snake  Phylogeography. Book Chapter in the forthcoming book: Snakes: Ecology  and  Conservation. Seigel and Mullin (Eds.)

Burbrink, F. T., F. Fontanella, A. Pyron, T. J. Guiher, and C. Jimenez. 2008.  Phylogeography across a continent: the evolutionary and demographic history of  the North Amerrican Racer (Serpentes: Colubridae: Coluber constrictor).   Molecular Phylogenetics and Evolution (in press).

Burke, RL, S. R. Goldberg, C. R. Bursey, S. L. Perkins, and P. T. Andreadis.  Depauperate parasite fauna in introduced populations of Podarcis (Squamata: Lacertidae) lizards in North America. Journal of Herpetology.  In press.

Burmeister, KC, J.J. Flynn, J.M. Parrish, and A.R. Wyss. 2006.   Paleogeographic and biostratigraphic implications of new early Mesozoic terrestrial vertebrate fossils from Poamay, central Morondava Basin, Madagascar.  Bulletin of the New Mexico Museum of Natural History, v. 37, p. 457-475 (special volume: The Triassic-Jurassic Terrestrial Transition, J.D. Harris, S.G. Lucas, J.A. Spielmann, M.G. Lockley, A.R.C. Milner, and J.I. Kirkland [eds.]).

Bryson R. W. Jr., J. Pastorini, F. T. Burbrink, and M. R.J. Forstner. 2007. A  phylogeny of the Lampropeltis mexicana complex (Serpentes: Colubridae)  based on mitochondrial DNA sequences suggests evidence for species-level  polyphyly within Lampropeltis. Molecular Phylognetics and Evolution.  43:674-684.  Burk RD, DeSalle R. 2006. The Tango and Tangle of Human Papillomavirus and the Human Genome. J  Natl Cancer Inst 98:1026-1027

Bybee, R. and J. Cracraft.  2005.  Educating a new generation about evolutionary science and society.  Pp. 201-202 in Evolutionary Science and Society: Educating  a New Generation (J. Cracraft and R. Bybee, eds.).  Biological Sciences Curriculum Study, Colorado Springs, CO.

Cain, D.J., Luoma, S.N., Wallace, W.G. 2004. Inter-specific tissue concentrations and subcellular partitioning of Cd, Cu, and Zn as a basis for understanding metal sensitivity in stream insects. Environ. Toxicol. Chem.  23(6): 1463-1473

Calcagnotto, D, Schaefer, A and DeSalle, R. 2005.   Relationships among characiform fishes inferred from analysis of nuclear and mitochondrial gene sequences.   Molecular Phylogenetics and Evolution 36:  135-153.

Carpenter, J. M. and P. L. T. Nguyen. 2003. Keys to the genera of social wasps of South-East Asia. Entomological Science 6: 183-192.

Carpenter, J. M. and E. P. Perera. 2006. Phylogenetic relationships among yellowjackets and the evolution of social parasitism. American Museum Novitates 3507: 1-19.

Casjens, S., Huang, W., Gilcrease, E., Qiu, W. G., McCaig, W., Luft, B., Schutzer, S., and Fraser, C. 2006. Comparative genomics of Borrelia burgdorferi. In:  The Molecular Biology of Spirochetes , Cabello, F., Hulinska, D., and Godfrey, H. (Eds.), IOS Press, Amsterdam, pp. 79-96.

Cassis, G., M.A. Wall, and R.T. Schuh. 2007.  Insect biodiversity and industrializing the taxonomic process: A case study with the Miridae (Heteroptera). In: Towards the Tree of Life: taxonomy and  systematics of large and species rich clades. (Trevor Hodkinson, and John Parnell, eds), pp. 193-212. CRC Press, Boca Raton.

Chaparro, JC, J. B. Pramuk, A. G. Gluesenkamp, and D.R. Frost.  2007.  Secondary homonymy of Bufo proboscideus Spix, 1824, with Phryniscus proboscideus Boulenger, 1882. Copeia, In press.

Charrier, R, A.N. Chávez, S. Elgueta, G. Hérail, J.J. Flynn, D.A. Croft, A.R. Wyss, and M. García.  2005.  Rapid tectonic and paleogeographic basin evolution associated with the development of the Chucal anticline and the Chucal-Lauca Basin in the Altiplano of Arica, northern Chile.  Journal of South American Earth Sciences (Special volume on Cenozoic Andean Basin Evolution, 5th ISAG), v. 19, p. 35-54.

Charrier, R, M. Bustamante, D. Comte, S. Elgueta, J.J. Flynn, N. Iturra, N. Muñoz, M. Pardo, R. Thiele, and A.R. Wyss. 2005.   The Abanico extensional basin: Regional extension, chronology of tectonic inversion, and relation to shallow seismic activity and Andean uplift.  Neues Jahrbuch für Geologie und Paläontologie, Abh. 236 (1-2): 43-77.

Charleston, M. A., and S. L. Perkins.  2003. Lizards, malaria, and jungles in the Caribbean. In Tangled Trees: Phylogeny, Cospeciation and Coevolution (Page, R. D. M., ed.) Chicago: University of Chicago.

Charleston MA and S. L. Perkins.  2005.  Traversing the tangle: algorithms and applications for cophylogeny studies.  Journal of Biomedical Informatics.  39:62-71.

Chen Z, Terai M, Fu L, Herrero R, DeSalle R, and Burk RD.  2005.  Diversifying selection in human papillomavirus type 16 lineages based on complete genome analyses.  J Virol. 79:7014-23. 

Chiu JC, Lee EK, Egan MG, Sarkar IN, Coruzzi GM, DeSalle R. 2006. OrthologID: automation of genome-scale  ortholog identification within a parsimony framework.   Bioinformatics 22(6):699-707.

Cibois, A. and J. Cracraft.  2004.   Assessing the passerine “Tapestry”: phylogenetic relationships of the Muscicapoidea inferred from nuclear DNA sequences.   Mol.  Phylogen.  Evol.  32: 2006264-273.

Conway, K.W. & M.L.J. Stiassny. Phylogenetic diagnosis of the African cyprinid genus Clypeobarbus Fowler, with the rehabilitation of C. bomokandi  (Myers) and notes on included species. Ichthyological Research.  In press

Cooch, EG, G Gauthier and RF Rockwell.  2003.  Apparent differences in stochastic growth rates based on timing of census: a cautionary note.  Ecological Modeling 159:133-143.

Coombs, S. and C. B. Braun.  2003.  Information Processing by the Lateral Line System.  In: Sensory Processing of the Aquatic Environment (S.P. Collin and N.J. Marshall, eds.)  Springer-Verlag, N.Y.    122-138.

Coombs, S., Anderson, E., Grosenbaugh, M. and CB Braun.  2007.  The hydrodynamic footprint of a benthic, sedentary fish in unidirectional flow.  Journal of The Acoustical Society of America, in press.

Cordova, M.S. and C.B. Braun.  2007.  The use of anesthesia during evoked potential audiometry in goldfish (Carassius auratus)  Brain Research, 1153:  78-83.

Coronado, J. E.; Attie, O.; Epstein, S. L.; Qiu, W. G.; Lipke, P. N. 2006.  Composition-modified matrices improve identification of homologs of Saccharomyces cerevisiae low-complexity glycoporteins. Eukaryotic Cells. 5 (4): 628-637

Coronado, J. E.; Epstein, S. L.; Qiu, W. G.; Lipke, P. N. 2007. Discovery of recurrent sequence motifs in Saccharomyces cerevisiae cell wall proteins. MATCH Communications in Mathematical and in Computer Chemistry. 58: 281-299

Corthals A, Desalle R. 2005. An application of tissue and  DNA banking for genomics and conservation: the Ambrose  Monell Cryo-Collection (AMCC). Syst Biol 54(5):819-823.

Cracraft, J., F. Keith Barker, and A Cibois.  2003.  Avian higher-level phylogenetics and the Howard and Moore checklist of birds.  Pp. 16-21 in The Howard and Moore Complete Checklist of the birds of the world (E. C. Dickinson, ed.).  Christopher Helm (A & C Black Publ.), London.

Cracraft, J. 2004. The new creationism and its threat to science literacy and education.  BioScience 54:3

Cracraft, J., F. K. Barker, M. Braun, J. Harshman, G. J. Dyke, J. Feinstein, S. Stanley, A. Cibois, P. Schikler, P. Beresford, J. García-Moreno, M. D. Sorenson, T. Yuri, and D. P. Mindell. 2004. Phylogenetic relationships among modern birds (Neornithes): toward an avian tree of life.  Pp. 468-489 in Assembling the tree of life (J. Cracraft and M. J. Donoghue, eds.). Oxford Univ. Press, New York.

Cracraft, J. and M. J. Donoghue.  2004.  Assembling the tree of life: where we stand at the beginning of the 21st century.  Pp. 553-561 in Assembling the tree of life (J. Cracraft and M. J. Donoghue, eds.). Oxford Univ. Press, New York.

Cracraft, J.  2004.  A new AIBS for the age of biology.  BioScience 54:979.

Cracraft, J. and R. Bybee.  2005.  Evolutionary science and society: saving lives and promoting prosperity.  Pp. 1-3 in Evolutionary Science and Society: Educating  a New Generation (J. Cracraft and R. Bybee, eds.).  Biological Sciences Curriculum Study, Colorado Springs, CO.

Cracraft, J.  2005. An overview of the Tree of Life.  Pp. 43-51 in Evolutionary Science and Society: Educating  a New Generation (J. Cracraft and R. Bybee, eds.).  Biological Sciences Curriculum Study, Colorado Springs, CO.

Cracraft, J. 2005.  Phylogeny and evo-devo: characters, homology, and the historical analysis of the evolution of development.  Zoology 108:345-356.

Cracraft, J.  2006. Reconstructing change in biological systems: are there commonalities between evolutionary biology and the humanities?  Pp. 270-284 in Understanding Change: Models, Methodologies and Metaphors (A. Wimmer and R. Kössler, eds.).  Houndmills, UK, Palgrave Macmillan.

Croft, DA, M. Bond, J.J. Flynn, M. Reguero, and A.R. Wyss.  2003.  Large archaeohyracids (Typotheria, Notoungulata) from central Chile and Patagonia, including a revision of Archaeotypotherium.  Fieldiana (Geology), N.S., no. 49, p. 1-38 (plus pages i-v).

Croft, DA, J.P. Radic, E. Zurita, R. Charrier, J.J. Flynn, and A.R. Wyss.  2003.  A Miocene toxodontid (Mammalia: Notoungulata) from the sedimentary series of the Cura-Mallín Formation, Lonquimay, Chile.  Revista Geologica de Chile, vol. 30, no. 2, p. 285-298.

Croft, DA, J.J. Flynn, and A.R. Wyss.  2004.  Notoungulata and Litopterna from the Early Miocene Chucal Fauna, Northern Chile.  Fieldiana (Geology), N.S., no. 50 (publication 1528), p. 1-52 (plus i-iv).

Croft, DA, L.R. Heaney, J.J. Flynn, and A.P. Bautista. 2006.    A new extinct, diminutive Bubalus (Artiodactyla: Bovidae: Bovini) from Cebu Island, Philippines.  Journal of Mammalogy, v. 87, no. 5, p. 1037-1051.

de Carvalho, M. S. S., and Maisey, J. G. 2007.  The Genus Mawsonia (Sarcopterygii; Actinistia) from the Cretaceous of Brazil, with a description of new material from the  Sanfrancisco Basin, State of Minas Gerais, southeastern Brazil.  In Longbottom, A., Cavin, L., and Richter, M. (eds.),  Fishes and the break-up of Pangaea.  London, Geological Society of London, Special Publications Series.

de Carvalho, M. R., F. A. Bockmann, D. S. Amorim, C. R. F. Brandão, M. de Vivo, J. L. de Figueiredo, H. A. Britski, M. C. C. de Pinna, N. A. Menezes, F. P. L. Marques, N. Papavero, E. M. Cancello, J. V. Crisci, J. D. McEachran, R. C. Schelly, J. G. Lundberg, A. C. Gill, R. Britz, Q. D. Wheeler, M. L. J. Stiassny, L. R. Parenti, L. M. Page, W. C. Wheeler, J. Faivovich, R. P. Vari10, L. Grande, C. J. Humphries, R. DeSalle, M. C. Ebach, and G. J. Nelson. 2007. Taxonomic Impediment or Impediment to Taxonomy? A Commentary on Systematics and the Cybertaxonomic-Automation Paradigm. Evolutionary Biology, in press.

Delson, E, H Thomas, and N Spassov.  2005.  Fossil Old World monkeys (Primates: Cercopithecidae) from the Pliocene of Dorkovo, Bulgaria. Geodiversitas 27: 159-166.

Delson, E and K Harvati.  2005.  Return of the last Neanderthal. Nature (News & Views), 443: 752-753.

Delson, E., Faure, M., Guérin, C., Aprile, A., Argant, J., Blackwell, B., Debard, E., Harcourt-Smith, W., Martin-Suarez, E., Monguillon, A., Parenti, F., Pastre, J.-F., Sen, S., Skinner, A.R., Swisher, C.C. III, and Valli, A.M.F.  2006.  Franco-American renewed research at the Late Villafranchian locality of Senèze (Haute-Loire, France). Courier Forschunginstitut Senckenberg  256: 275-290.

Dennehy, J.J. & Turner, P.E. 2004. Reduced fecundity is the cost of cheating in RNA virus Φ6. Proceedings of the Royal Society: Biological Sciences, 271: 2275-2282.

Dennehy, J.J. & Livdahl, T. 2004. Polymorphic foraging behavior among Caenorhabditis elegans. frequency- and density-dependent selection. Journal of Nematology, 36: 276-280.

Dennehy, J.J., Yang, Y., Friedenberg N. & Turner, P.E. 2006. Bacteriophage migration via nematode vectors:  host-parasite-consumer interactions in laboratory microcosms. Applied and Environmental Microbiology, 72: 1974-1979.

Dennehy, J.J., Friedenberg, N. Holt, R.D. & Turner, P.E. 2006. Viral ecology and the maintenance of novel host use. The American Naturalist, 167: 429-439.

Dennehy, J.J. & Abedon, S.T. Turner, P.E. 2007. Host density impacts relative fitness of bacteriophage φ6 genotypes in structured habitats. Evolution Published article online: 23-Aug-2007

Dennehy, J.J., Friedenberg N., Yang, Y. & Turner, P.E. 2007. Virus population extinction via ecological traps.  Ecology Letters, 10: 230–240.

DeSalle R, Branham MA, O'Grady P, Gatesy J., 2003.  The evolution of HOM-C homeoboxes in the Dipteran family Drosophilidae. Insect Mol Biol. 12: 345-51.

DeSalle, R Gregory, TR, and Johnston, JS.  2005.  Preparation of samples for comparative studies of arthropod chromosomes: visualization, in situ hybridization, and genome size estimation. Methods Enzymol. 395:460-88.

DeSalle R. Animal phylogenomics: multiple interspecific genome comparisons. 2005.  Methods Enzymol. 395:104-33.

DeSalle R, and Amato G. The expansion of conservation genetics. 2004.  Nat Rev Genet. 5:702-12.

DeSalle R, Egan MG, Siddall M.2005.  The unholy trinity: taxonomy, species delimitation and DNA barcoding. 2005.  Philos Trans R Soc Lond B Biol Sci. 2005 Oct 29;360(1462):1905-16.

DeSalle R.  2005.Genetics at the brink of extinction.  Heredity. 2005 Apr;94(4):386-7.

DeSalle R. 2005. Animal phylogenomics: multiple interspecific genome comparisons. Methods Enzymol 395:104-133.

DeSalle, R. and Egan M. Molecular paleontology.  2005.  pp299-306 in Encyclopedia of Molecular Biology and Molecular Medicine, Volume 4., ed. by R.A. Meyers.  VCH Publishers, New York.

DeSalle R. 2006. What's in a character? J Biomed Inform 39(1):6-17.

Devitt, T., B. I. Crother, A. Meier, F. T. Burbrink and J. J. Boundy. 2007. Pituophis  catenifer (Bullsnake) Maximum Length. Herpetolgical Review 38: 209

Donoghue, M. J. and J. Cracraft.  2004.  Introduction: Charting the Tree of Life.  Pp. 1-4 in Assembling the tree of life (J. Cracraft and M. J. Donoghue, eds.). Oxford Univ. Press, New York.

Doukakis, P, Birstein, VJ, DeSalle, R. 2005.  Intraspecific structure within three caviar-producing sturgeons (Acipenser gueldenstaedtii, A. stellatus, and Huso huso) based on mitochondrial DNA analysis. Journal of Applied Ichthyology 21: 457-460.

Druce, D., Hamer, M., Slotow, R. and Prendini, L. 2004. Checklist of millipedes (Diplopoda), centipedes (Chilopoda) and scorpions (Arachnida: Scorpionida) from a savanna ecosystem, Limpopo Province, South Africa. African Invertebrates 45: 315322.

Dubatolov, V., J. Kojima, J. M. Carpenter and A. Lvovsky. 2003. Subspecies of Vespa crabro in two different papers by Birula in 1925. Entomological Science 6: 215-216.

Dudgeon, D., A.H. Arthington, M.O. Gessner, Z. Kawabata, D.J. Knowler, C. Lévêque, R.J., Naiman, A.-H., Prieur-Richard, D. Soto, M.L.J. Stiassny & C.A. Sullivan. 2005 Freshwater biodiversity: importance, threats, status and conservation challenges. Biological Reviews 81:163-182.

Dunlop, J.A., Tetlie, O.E. and Prendini, L. (in press). Reinterpreting the Silurian scorpion Proscorpius osborni (Whitfield, 1885): Integrating data from Palaeozoic and Recent scorpions. Palaeontology.

Dunning, D.J., J.R. Waldman, Q.E. Ross, M.T. Mattson.  2006.  Dispersal of Age-2+ striped bass out of the Hudson River.  American Fisheries Society Symposium Series 51:287-294.

Dyer, L. A., Matlock, R. B., Chehrezad, D. and R. O’Malley. 2005. Predicting caterpillar parasitism in banana plantations. Environmental Entomology 34:403-409.

Elith, J., C. H. Graham, R. P. Anderson, M. Dudík, S. Ferrier, A. Guisan, R. J. Hijmans, F. Huettmann, J. R. Leathwick, A. Lehmann, J. Li, L. G. Lohmann, B. A. Loiselle, G. Manion, C. Moritz, M. Nakamura, Y. Nakazawa, J. M. Overton, A. T. Peterson, S. J. Phillips, K. Richardson, R. Scachetti-Pereira, R. E. Schapire, J. Soberón, S. Williams, M. S. Wisz, and N. E. Zimmerman. 2006. Novel methods improve prediction of species’ distributions from occurrence data. Ecography, 29:129–151.

Engel, M.S. and D. Grimaldi. 2004.  New light shed on the oldest insect.  Nature 427: 627-630.

Engel, M. S. and D. Grimaldi.  2004.  A new rock crawler in Baltic amber, with comments on the order (Mantophasmatodea: Mantophasmatidae).  American Museum Novitates 3431: 11 pp.

Engel, M.S. and D.A. Grimaldi. 2004.  A primitive earwig in Cretaceous amber from Myanmar (Dermaptera: Pygidicranidae).  Journal of Paleontology 78:  1018-1023.

Engel, M.S., and D. A. Grimaldi. 2004.  The first Mesozoic stephanid wasp (Hymenoptera: Stephanidae). Journal of Paleontology 78: 1192-1197.

Engel, M.S. and D. Grimaldi.  2005.  Primitive new ants in Cretaceous amber from Myanmar, New Jersey, and Canada (Hymenoptera: Formicidae).  American Museum Novitates 3485: 23 pp.

Engel, M.S. and D. Grimaldi.  2006. The first Cretaceous sclerogibbid wasp (Hymenoptera: Sclerogibbidae).  American Museum Novitates 3515:  1-7.

Engel, M. S. and D. Grimaldi. 2006.  The earliest webspinners (Insecta: Embiodea).  American Museum Novitates 3514: 1-15.

Engel, M.S. and D. Grimaldi. 2006.  Cretaceous Scolebythidae (Hymenoptera) and phylogeny of the family.  American Museum Novitates 3568:  1-21.

Engel, M. S. and D. A. Grimaldi.  2006.  The first Cretaceous spider wasp (Hymenoptera: Pompilidae).  Journal of the Kansas Entomological Society 79:  359-368.

Engel, M.S. and D. A. Grimaldi.  2006.  A diminutive pelecinid wasp in Cretaceous amber from New Jersey (Hymenoptera: Pelecinidae).  Northeastern Naturalist 13: 291-297.

Engel, M.S. and D. Grimaldi. 2006.  Miocene Neuropterida from Hispaniola.  American Museum Novitates, in press.

Engel, M.S., D. Grimaldi, and K. Krishna.  2007.  Termites from the Cretaceous of Asia.  Stutt. Beitr. Naturkunde C:  in press.

Engel, M.S., D. Grimaldi, and K. Krishna.  2007.  Synopsis of the termites in Baltic amber.  Stutt. Beitr. Naturkunde C:  in press.

Evans, M.E.K. and Dennehy, J.J. 2005. Germ Banking: Bet hedging and variable release from egg and seed dormancy. Quarterly Review of Biology, 80: 431-451.

Eyles, A. C. and R. T. Schuh.  2003.  Revision of New Zealand Bryocorinae and Phylinae (Insecta: Hemiptera: Miridae).  New Zealand Journal of Zoology  30:  263—325.

Falkowski, P. G., M. E. Katz, A. J. Milligan, K. Fennel, B. S. Cramer, M. P. Aubry, R. A. Berner, M. J. Novacek, and W. M. Zapol. The Rise of oxygen over the past 205 million years and the evolution of large placental mammals. Science 309:2202-2204.

Faure, M, C Guérin & E Delson. 2004.  Le gisement villafranchien de Senèze à Domeyrat (Haute-Loire). IN (J.F. Pastre, ed.) Quaternaire et volcanisme en Auvergne et Velay. Livret-guide de l'excursion de l'Association française pour l'étude du Quaternaire (mai, 2004), pp. 114-122.

Favovich, J., P. C. A. Garcia, F. Ananias, L. Lanari, N. G. Basso, and W.C. Wheeler. 2004. A molecular perspective on the phylogeny of the Hyla pulchella species group (Anura: Hylidae). Mol. Phyl. Evol, 32:938-950.

Faivovich, J, C. Haddad, P. Garcia, D. Frost, J. Campbell, and W. Wheeler.  2005.  Systematic review of the frog family Hylidae, with special reference to the Hylinae: phylogenetic analysis and taxonomic revision. Bulletin of the American Museum of Natural History 294: 1–240.

Feinstein, J. F. and J. Cracraft.  2004.  Solving a sequencing problem in the vertebrate mitochondrial control region using phylogenetic comparisons.  DNA Sequence 15:374-377.

Feinstein J, Purzycki KL, Mori SA, Hequet V, Berkov A.  Neotropical soldier flies (Stratiomyidae) reared from Lecythis poiteaui in French Guiana: do bat-pollinated flowers attract saprophiles? Journal of the Torrey Botanical Society. In press

Feinstein J, Mori SA, Berkov A. 2007. Saproflorivory: A diverse insect community in fallen flowers of Lecythidaceae in French Guiana. Biotropica 39: 549-554.

Fernández, L., and S.A. Schaefer. 2003. Trichomycterus yuska, a new species from high elevations of Argentina (Siluriformes: Trichomycteridae). Ichthyological Exploration of Freshwaters, 14(4):353-360.

Fernández, L., and S.A. Schaefer. 2005. New Trichomycterus (Siluriformes: Trichomycteridae) from an offshore island of Colombia. Copeia, 2005(1):68-76.

Fernández, L., L. J. Saucedo, F. M. Carvajal-Vallejos, and S. A. Schaefer.  A new phreatic catfish of the genus Phreatobius Goeldi 1905 from groundwaters of the Iténez River, Bolivia (Siluriformes, Heptapteridae). Zootaxa, 16 ms p., 3 figs. in press

Finarelli JA and J.J. Flynn. 2006.   Ancestral state reconstruction of body size in the Caniformia (Carnivora, Mammalia): The effects of incorporating data from the fossil record.  Systematic Biology, v. 55, no. 2, p. 301-313.

Finarelli, JA and J.J. Flynn. 2007.   The evolution of encephalization in caniform carnivorans. Evolution, v. 61(7), p. 1758-1772

Fjerdingstad, E.J., P.J. Gertsch, and L. Keller. 2003. The relationship between multiple mating by queens, within-colony genetic variability and fitness in the ant Lasius niger. Journal of Evolutionary Biology 16:844-853.

Fjerdingstad, E.J., and L. Keller. 2004. Relationships between phenotype, mating behaviour, and fitness of queens in the ant Lasius niger. Evolution 58: 1056-1063.

Fjerdingstad, E.J. 2004. Multiple-paternity and colony homeostasis in Lasius niger ants. Behavioral Ecology and Sociobiology 56:50-58.

Fjerdingstad, E.J. 2005. Control of body size of Lasius niger ant sexuals – worker interests, genes and environment. Molecular Ecology 14: 3123-3132.

Fjerdingstad, E.J., and R.H. Crozier. 2006. The evolution of worker caste diversity in social insects.  American Naturalist 167: 390-400.

Fjerdingstad, E.J., N. Schtickzelle, P. Manhes, A. Gutierrez, and J. Clobert. 2007. Evolution of dispersal and life history strategies – Tetrahymena ciliates. BMC Evolutionary Biology. In press.

Fleck, D.W. and R.S. Voss.  2007.  On the origin and cultural significance of unusually large synonym sets in some Panoan languages of northwest Amazonia.  Anthropological Linguistics 48: 335-368.

Flynn, JJ, A.R. Wyss, D.A. Croft, and R. Charrier.  2003.  The Tinguiririca Fauna, Chile: Biochronology, paleoecology, biogeography, and a new earliest Oligocene South American Land Mammal “Age”.  Palaeogeography, Palaeoclimatology, Palaeoecology, v. 195, no. 3/4, p. 229-259.

Flynn JJ and A.R. Wyss.  2003.  "Mesozoic terrestrial vertebrate faunas: The early history of Madagascar's vertebrate diversity.  IN: Goodman, S.M. and Benstead, J. (eds.), The Natural History of Madagscar, University of Chicago Press, Chicago, p. 34-40 (plus references in composite Geology and Soils  reference list on p. 67-74).

Flynn, JJ and A.R. Wyss.  2004.  A polydolopine marsupial skull from the Cachapoal Valley, Andean Main Range, Chile.  Bulletin of the American Museum of Natural History (“Tributes to Malcolm C. McKenna: His students, his legacy” [Festscrift], edited by G. Gould and S.K. Bell, Chap. 6), v. 285, p. 80-92.

Flynn, JJ and G.D. Wesley-Hunt.  2005.  Carnivora. pp. 175-198.  In The Rise of Placental Mammals: Origins and Relationships of the Major Extant Clades, D. Archibald and K. Rose (eds.).  Johns Hopkins University Press, Baltimore (published 3/18/05).

Flynn, JJ, B.J. Kowallis, C. Nuñez, O. Carranza-Castañeda, W.E. Miller, C.C. Swisher III, and E. Lindsay. 2005.   Geochronology of Hemphillian-Blancan aged strata, Guanajuato, Mexico, and implications for timing of the Great American Biotic Interchange.  Journal of Geology, v. 113, no. 3, p. 287-307.

Flynn, JJ, J.A. Finarelli, S.M. Zehr, J. Hsu, and M.A. Nedbal. 2005.   Molecular phylogeny of the Carnivora (Mammalia): Assessing the impact of increased sampling on resolving enigmatic relationships.  Systematic Biology, v. 54, no. 2, p. 1-21.

Flynn, JJ, D.A. Croft, R. Charrier, A.R. Wyss, G. Hérail, and M. García. 2005.   New Mesotheriidae (Mammalia, Notoungulata, Typotheria), geochronology, and tectonics of the Caragua Area, northernmost Chile.   Journal of South American Earth Sciences (Special volume on Cenozoic Andean Basin Evolution, 5th ISAG), v. 19, p. 55-74.

Flynn, JJ, S. Fox, J.M. Parrish, L. Ranivoharimana, and A.R. Wyss. 2006.   Assessing diversity and paleoecology of a Middle Jurassic microvertebrate assemblage from Madagascar.  Bulletin of the New Mexico Museum of Natural History, v. 37, p. 476-489 (special volume: The Triassic-Jurassic Terrestrial Transition, J.D. Harris, S.G. Lucas, J.A. Spielmann, M.G. Lockley, A.R.C. Milner, and J.I. Kirkland [eds.]).

Fontanella, F. F, C. R. Feldman, M. E. Siddall, and F. T. Burbrink. 2008.  Phylogeography of Diadophis punctatus: extensive lineage diversity and  repeated patterns of historical demography in a trans-continental snake.  Molecular Phylogenetics and Evolution (in Press).

Francke, O.F. and Prendini, L. Phylogeny and classification of the giant hairy scorpions, Hadrurus Thorell (Iuridae Thorell): A reappraisal. Systematics and Biodiversity. (in press).

Frank, A. T., N. S. Farina, N. Sawwan, O. R. Wauchope, M. Qi, E. M. Brzostowska, F. W. Grasso,  P. Haberfield and A Greer.  2007.  “Evidence for, and a possible explanation of an even over odd preference in natural macrocycle ring sizes.” Natural Products Research, in press.

Fraser, N. C. and D. A. Grimaldi. 2003.  Late Triassic continental faunal change:  new perspectives on Triassic insect diversity as revealed by a locality in the Danville Basin, Virginia, Newark Supergroup.  Pp. 192-205 In:  P. M. LeTourneau and P. E. Olsen (eds.), The Great Rift Valleys of Pangea in Eastern North America.  New York: Columbia University Press.

Frost D. and M. Lannoo.  2005.  Siren “texana”. p. 914 In M. Lannoo (ed.), Amphibian Declines: The Conservation Status of United Sates Species. University of California Press.

Frost, DR, T. Grant, and J. Mendelson.  2006.  Ollotis Cope, 1875, is the oldest name for the genus currently referred to as Cranopsis Cope, 1875 (Anura: Hyloides: Bufonidae). Copeia 2006(3): 558 

Frost, D, T. Grant, J. Faivovich, R. Bain, A. Haas, C. Haddad, R. de Sa, A. Channing,  M. Wilkinson, S. Donnellan, C. Raxworthy, B. Blotto, P. Moler, R. Drewes, R. Nussbaum,  J. Lynch, D. Green, and W. Wheeler.  2006.  The amphibian tree of life. Bulletin of the American Museum of Natural History 297: 1–370.

Frost DR, T. Grant, J. Faivovich, R.H. Bain, A. Haas, C.F.B. Haddad, R.O. de Sa, A. Channing, M. Wilkinson, S.C. Donnellan, C.J. Raxworthy, J.A. Campbell, B.L. Blotto, P. Moler, R.C. Drewes, R.A. Nussbaum, J.D. Lynch, D.M. Green, and W.C. Wheeler.  2007.  Is the Amphibian Tree of Life really flawed? Cladistics, In press

Frost, SR, LF Marcus, D Reddy, F Bookstein and E. Delson.  2003.  Cranial allometry, phylogeography and systematics of large bodied papionins (Primates: Cercopithecinae) inferred from geometric morphometric analysis of landmark data. Anatomical Record 275A: 1048-1072.

Furano, AV, D. Duvernell and S. Boissinot. 2004. L1 (LINE-1) retrotransposon diversity differs dramatically between mammals and fish. Trends in Genetics 20(1): 9-14.

Gayen, T. K., Katz, A., Savage, H. E., Lee, J., Paul, M. Halder, R. K.,McCormick, S.A. and Alfano, R. R. 2003.  Near-infrared laser welding of aortic and skin tissues and microscopic investigation of welding efficacy. Lasers in Surgery: Advanced characterization, therapeutics, and systems XIII. SPIE 4949:182-185

Gatesy J, Amato G, Norell M, DeSalle R, Hayashi C.  2003.  Combined support for wholesale taxic atavism in gavialine crocodylians. Syst Biol. 5: 403-22. Erratum in: Syst Biol 52: 734.

Getahun, A., Stiassny, M.L.J. & G.G. Teugels. 2004. Description of a new species of Varicorhinus  (Ostariophysi: Cyprinidae) from West-Central Africa. Cybium 28(2): 159-162.

Giannini, N. P., and N. B. Simmons.  2003. A phylogeny of megachiropteran bats (Mammalia: Chiroptera: Pteropodidae) based on direct optimization analysis of one nuclear and four mitochondrial genes.  Cladistics 19: 496-511.

Giannini, N. P., and N. B. Simmons.  2005.  Conflict and congruence in a combined DNA-morphology analysis of megachiropteran bat relationships (Mammalia: Chiroptera: Pteropodidae).  Cladistics 21: 411-437.

Giannini, N. P., and N. B. Simmons.  2007  The chiropteran premaxilla:  a reanalysis of morphological variation and its phylogenetic interpretation.  American Museum Novitates 3585: 1-44.

Giannini, N. P., and N. B. Simmons.  2007.  Element homology and the evolution of dental formulae megachiropteran bats (Mammalia: Chiroptera: Pteropodidae).  American Museum Novitates 3559: 1-22.

Giannini, N. P., F. C. Almeida, N. B. Simmons, and R. DeSalle.  2006.  Phylogenetic relationships of the enigmatic Harpy Fruit Bat, Harpyionycteris (Mammalia: Chiroptera: Pteropodidae).  American Museum Novitates 3533: 1-12.

Giannini, N. P., J. R. Wible, and N. B. Simmons.  2006.  On the cranial Osteology of Chiroptera. I. Pteropus (Megachiroptera: Pteropodidae).  Bulletin of the American Museum of Natural History 295: 1-134.

Gibbs, J.P., C. Marquez and E.J. Sterling. The role of endangered species reintroduction in ecosystem restoration: Tortoise-cactus interactions on Española Island, Galápagos. Restoration Ecology.  in press.

Giribet G, Richter, S., Edgecombe G. D, and Wheeler W.C. 2005. “The position of crustaceans within the Arthopoda—evidence from nine molecular loci and morphology.” Pp307-352 in Crustacea and Arthropod Relationships, S. Koenemann and R. A. Jenner eds. Taylor and Franscis, Boca Raton.

Ginsberg, H.S., E. Zhioua, S. S. Mitra, J. Fischer, P. A. Buckley, F. Verrett, H. B. Underwood, and F. G. Buckley.  2004 Woodland type and spatial distribution of nymphal  Ixodes scapularis (Acari: Ixodidae). Environmental Entomology 33: 1266-1273.

Ginsberg, H. S., M. G. Balmforth, E. Zhioua, P. A. Buckley, S. S. Mitra, and F. G. Buckley. 2005 Reservoir competence of native North American birds for the Lyme disease spirochete, Borrelia burgdorferi.  Journal of Medical Entomology 42: 445-449.

Giribet G, Edgecombe G. D., Carpenter J.M., d‘Haese C., Wheeler W.C. 2004. Is Ellipura monophyletic? A combined analysis of basal hexapod relationships with emphasis on the origin of insects. Organisms, Diversity, and Evolution, 4:319-340.

Giribet, G, and W. C. Wheeler. 2007. The case for sensitivity: a response to Grant and Kluge. Cladistics 23:294-296.

Gleason, J. S., C. D. Ankney, J. O. Leafloor and K. F. Abraham. 2004. Variation in reproductive performance of Canada geese in the presence and absence of lesser snow geese. Page 75-83 in T.J. Moser, R.D. Lien, K.C. VerCauteren, K.F. Abraham, D.E. Andersen, J.G. Bruggink, J.M. Coluccy, D.A. Graber, J.O. Leafloor, D.R. Luukkonen, and R.E. Trost, editors. Proceedings of the 2003 International Canada Goose Symposium, Madison, Wisconsin, USA.

Goldstein PZ and DeSalle R.  2003.  Calibrating phylogenetic species formation in a threatened insect using DNA from historical specimens.   Mol Ecol. 12: 1993-8.

Goldstein, P, Wyner, W, Doukakis, P, Egan, MG, Amato, G, Rosenbaum, H, and DeSalle, R. 2005.  Theory and methods for diagnosing species and populations in conservation. Annals of the Missouri Botanical Gardens 92: 12-27.

Gómez-Laverde, M., R. P. Anderson, and L. F. García. 2004. Integrated systematic reevaluation of the Amazonian genus Scolomys (Rodentia: Sigmodontinae). Mammalian Biology, 69:119–139.

Goplan, V. , Qiu, W. G.; Chen, M. Z.; Stolzfus, A. 2006.  Nexplorer: Phylogeny-based exploration of sequence family data.  Bioinformatics. 22: 120-121

Gordon,, N., Shpigel, M, Harpaz, S, Lee, J. J. and Neori, A. 2004 The settlement of abalone (Haliotis discus hannai) larvae on culture layers of different diatoms.  J. Shellfish Research  23: 561-568.

Gordon,, N., Neori, A., Shpigel, M, Lee, J. J. and Harpaz, S . 2006  Effect of diatom diets  diatom on the growth and survival of the abalone Haliotis discus hannaii post-larvae. Aquaculture 252: 225-233

Goswami, A, J.J. Flynn, L. Ranivoharimanana, and A.R. Wyss. 2005.   Dental microwear in Triassic amniotes: Implications for paleoecology and masticatory mechanics.  Journal of Vertebrate Paleontology, v. 25, no. 2, p. 320-329.

Goto, D., Wallace, W.G. 2007. Interaction of Cd and Zn during uptake and loss in the polychaete Capitella capitata: whole body and subcellular perspectives. Mar. Environ. Res. (in press)

Graham T and S. Boissinot. 2006. The genomic distribution of L1 elements: the role of insertion bias and natural selection. Journal of Biomedicine and Biotechnology 2006: 1-5.

Grant, T., D.R. Frost, J.P. Caldwell, R. Gagliardo, C.F.B. Haddad, P.J.R. Kok, B.D. Means, B.P. Noonan, W. Schargel, and W.C. Wheeler. 2006. Phylogenetic systematics of dart-poison frogs and their relatives (Anura: Athesphatanura: Dendrobatidae). Bulletin of the American Museum of Natural History 299:184-203.

Grant, T, D. Frost, J. Caldwell, R. Gagliardo, C. F. B. Haddad, P. Kok, D. B. Means, B. P. Noonan, W. E. Schargel, and W. C. Wheeler.  2006.  Phylogenetic systematics of dart-poison frogs and their relatives (Amphibia: Athesphatanura: Dendrobatidae). Bulletin of the American Museum of Natural History 299: 1–268.

Grant, T, R. Ibañez D, D. Frost, C.W. Myers, and J.M. Savage.  2006.  Hyloxalus panamensis Dunn, 1933: proposed emendation of spelling from Hyloxalus panamansis (currently Colostethus panamansis; Amphibia, Anura). Bulletin of Zoological Nomenclature 63(1): 39–41.

Grasso, F. W.  2007.  “Inspiration, Simulation and Design for Smart Robot Manipulators from the Sucker Actuation Mechanism of Cephalopods.” Bioinspiration and Biomimetics, in Press.

Grasso, F. W.  2007.  “Octopus Sucker-Arm Coordination in Grasping and Manipulation.” American Malacological Bulletin, in press.

Grazia, J, R. T. Schuh. and W. C. Wheeler. Phylogenetic relationships of family groups in Pentatomoidea based on morphology and DNA sequences (Insecta: Heteroptera). Cladisitcs, in press.

Greisman, L. and Moller, P. 2004. The anal-fin complex in a weakly discharging electric fish, Gnathonemus petersii Günther 1862 (Teleostei: Mormyridae). J. Biol. Fish. 66, 266-275.

Griffiths, C. S., G. F. Barrowclough, J. G. Groth, and L. Mertz.  2004.  Phylogeny of the Falconidae (Aves): a comparison of the efficacy of morphological, mitochondrial, and nuclear data.  Molecular Phylogenetics & Evolution 32:101-109.

Grimaldi, D. 2003.  “Fossil Record,” pp. 455-463 In: Encyclopedia of Insects, V.H. Resh and R. Cardé (eds.), Academic Press, New York.

Grimaldi, D. 2003.  “Coevolution” (pgs. 235-237), “Pollination” (pgs. 574-577), and “Terrestrial Arthropods” (pgs. 149-157), in Life on Earth: An Encyclopedia of Biodiversity, Ecology, and Evolution.  Santa Barbara: ABC CLIO.

Grimaldi, D. 2003.  A revision of Cretaceous mantises and their relationships, including new taxa (Insecta: Dictyoptera).  American  Museum Novitates 3412: 1-47. 

Grimaldi, D., F. Ervik, and R. Bernal.  2003.  Two new Neotropical genera of Drosophilidae (Diptera) visiting palm flowers.  Journal of the Kansas Entomological Society 76: 109-124 [Festschrift volume in honor of Jerome G. Rozen].

Grimaldi, D. 2003.  First amber fossils of the extinct family Protopsyllidiidae, and their phylogenetic significance among Hemiptera.  Insect Systematics and Evolution 34: 329-344.

Grimaldi, D., A. Shmakov, and N. Fraser.  2004.  Mesozoic thrips and early evolution of the order Thysanoptera (Insecta).  Journal of Paleontology 78: 941-952.

Grimaldi, D. and M. S. Engel.  2005.  Evolution of the Insects.  New York/Cambridge: Cambridge University Press.  xv + 755 pp.

Grimaldi, D.,  J. Kathirithamby, and V. Schawaroch. 2005. Strepsiptera and triungula in Cretaceous amber.  Insect Systematics and Evolution 36: 1-20.

Grimaldi, D., A. Rasnitsyn, and N. Fraser. 2005.  New and revised scorpionflies of the extinct family Pseudopolycentropodidae (Mecoptera), including two mosquito-like species in Cretaceous amber.  Insect Systematics and Evolution, in press.

Grimaldi, D. and M. S. Engel.  2005.  Fossil Liposcelididae and the lice ages (Insecta: Psocodea).  Proceedings of the Royal Society of London (B), Biological Sciences 273: 625-633.

Grimaldi, D. and M.S. Engel.  2006.  Extralimital fossils of the "Gondwanan" family Sphaeropsocidae (Psocodea). American Museum Novitates 3523: 1-18.

Ginter, M. and Maisey, J. G.  2007.  The braincase and jaws of Cladodus from the Lower Carboniferous of Scotland.  Palaeontology 50 (2): 305-322.

Grismado, Cristian J., Lara Lopardo, and Norman Platnick. 2003. A new species of Austrochilus from Chile (Araneae, Austrochilidae, Austrochilinae).  Journal of Arachnology 31: 148-150.

Griswold, Charles E., Martín J. Ramírez, Jonathan A. Coddington, and Norman Platnick. 2005. Atlas of phylogenetic data for entelegyne spiders (Araneae: Araneomorphae: Entelegynae) with comments on their phylogeny.  Proceedings California Academy Sciences, ser. 4, vol. 56, suppl. II, pp. 1-324, plates 1-220.

Gruber, K.F., R.S. Voss, and S.A. Jansa.  2007.  Base-compositional heterogeneity in the RAG1 locus among didelphid marsupials: implications for phylogenetic inference and the evolution of GC content.  Systematic Biology 56: 83-96.

Grunbaum, D. and R.R. Veit.  2003. Foraging behavior of Black-browed Albatrosses exploiting Antarctic krill: Density-dependence through local enhancement.  Ecology 84(12): 3265-3275.

Grunwald, C., L. Maceda, J. Waldman, J. Stabile, and I. Wirgin.  2008.  Conservation of Atlantic sturgeon Acipenser oxyrinchus oxyrinchus: delineation of stock structure and distinct population segments.  Conservation Genetics.  In press.

Gu J, Gu X.  2003.  Induced gene expression in human brain after the split from chimpanzee. Trends in Genetics. 19: 63-65.

Gu J.  2003.  Functional divergence and genome evolution of vertebrate protein kinases (kinome). Dissertation. Iowa State University.

Gu J, Gu X.  2003.  Natural history and functional divergence in protein tyrosine kinases. Gene. 317: 49-57.

Gu J, Gu X.  2004.  Further statistical analysis for genome-wide expression evolution in primate brain/liver/fibroblast tissues. Human Genomics. 1(4): 247-254.

Gu X, Wang Y, Gu J, Velden KV, Xu, D.  2006.  Predicting Type-I (Rate-Shift) Functional Divergence of Protein Sequences and Applications in Functional Genomics. Current Genomics 7(2): 87-96.

Gu J, Li WH.  2006.  Are GC-rich isochores vanishing in mammals? Gene. 385: 50-56.

Gu J, Neary JL, Sanchez M, Yu J, Lilburn TG, Wang Y.  2007.  Genome Evolution and Functional Divergence in Yersinia. Journal of Experimental Zoology: Molecular and Developmental Evolution. 308(1): 37-49.

Gu J, Neary JL, Moshfeghian A, Wang Y.  2007.  Lineage Specific Expansion in Vibrio Species. In: Proceeding of The 2007 International Conference on Bioinformatics & Computational Biology. (In press)

Guérin, C, M Faure, A Argant, J Argant, E Crégut-Bonnoure, E Debard, E Delson, V Eisenmann, M Hugueney, N Limondin-Lozouet, E Martin-Suarez, P Mein, C Mourer-Chauvire, F Parenti, J-F Pastre, S Sen and A Valli.  2004.  Le gisement pliocène supérieur de Saint-Vallier (Drôme, France): synthèse biostratigraphique et paléoécologique. Géobios 37: S349-S360.

Gunnell, G. F., and Simmons, N. B.  2005.  Fossil evidence and the origin of bats.  Journal of Mammalian Evolution, 12: 209-246.

Guralnick, R. P., E. Hall, and S. L. Perkins.  2004.  A comparative approach to understanding causes and consequences of mollusc-digenean size relationships:  A case study with Allocreadiid trematodes and Cyclocalyx clams.  Journal of Parasitology  90:1253-1262.

Hacker J, Hansen J, Berner J, Chen YQ, Eshel G, Hakim G, Lazarus S, Majumdar S, Morss R, Poje A, Sheremet V, Tang YM, Webb C.  2005.  Predictability, Bulletin of the American Meteorological Society, 86, p1733-1737.

Hadrys T, DeSalle R, Sagasser S, Fischer N, Schierwater B.2005.  The Trichoplax PaxB gene: a putative Proto-PaxA/B/C gene predating the origin of nerve and sensory cells. Mol Biol Evol. 2005 Jul;22(7):1569-78.

Hawkins, E. K. Lee, J. J. and Correia, MS. 2003 Polar localization of filamentous actin in cells of the scale-forming alga  Pleurochrysis sp. Protoplasma 220:233-236.

Haza, AC, A. Gria, P. Martin, A. Molcard, T.M. Ozgokmen, A.C. Poje, R. Barbanti, J.W. Book, P.M. Poulain, M. Rixsen, P. Zanasca.  2007.  Model-based directed drifter launches in the Adriatic Sea: Results from the DART experiment. A.C., Geophysical Research Letters, 34, L10605.

Helfenbein KG, and DeSalle R.  2005.  Falsifications and corroborations: Karl Popper's influence on systematics.  Mol Phylogenet Evol. 35:271-80.

Herbst L, Ene A, Su M, DeSalle R, and Lenz J. 2004.  Tumor outbreaks in marine turtles are not due to recent herpesvirus mutations.  Curr Biol. 14:R697-9.

Hickerson, M.J., M. Gilchrist, and N. Takebayashi. 2003. Calibrating a molecular clock from Phylogeographic data:  moments and likelihood estimators.  Evolution 57:  2216-2225.

Hickerson M.J. and C. W. Cunningham. 2005. Contrasting Quaternary histories in an ecologically divergent pair of low-dispersing intertidal fish (Xiphister) revealed by multi-locus DNA analysis. Evolution 59: 344-360.

Hickerson, M.J., E, Stahl, and H.A. Lessios. 2006 Test for simultaneous divergence using approximate Bayesian computation.  Evolution 60: 2435-2453

Hickerson, M.J., C. W. Cunningham. 2006 Nearshore fish (Pholis gunnellus) persists across the North Atlantic through multiple glacial episodes. Molecular Ecology 15: 4095-4107

Hickerson, M.J., C. Meyer, and C. Moritz. 2006 DNA-Barcoding will often fail to Discover New Animal Species over Broad Parameter Space. Systematic Biology 55: 729-739

Hickerson, M.J., G. Dolman, and C. Moritz. 2006. Phylogeographic summary statistics for testing histories of co-distributed taxon-pairs. Molecular Ecology 15:  209-224.

Hickerson, M.J., E. Stahl, and N. Takebayashi. 2007 msBayes: A flexible pipeline for comparative phylogeographic inference using approximate Bayesian computation (ABC).  (in press; BMC Bioinformatics)

Hitz, RH, J.J. Flynn, and A.R. Wyss.  2006.  New basal Interatheriidae (Typotheria, Notoungulata, Mammalia) from the Paleogene of central Chile. American Museum Novitates, no. 3520, p. 1-32.

Hladish, T.; Gopalan, V.; Liang, C. Z.; Qiu, W. G.; Yang, P.; Stoltzfus, A. 2007. Bio::NEXUS: a Perl API for the NEXUS format for comparative biological data. BMC Bioinformatics. 8:191.

Holycross, AT, T.G. Anton, M.E. Douglas, D.R. Frost.   2007.  The type localities of Sistrurus catenatus and Crotalus viridis (Serpentes: Viperidae), with the unraveling of a most unfortunate tangle of names. Copeia, in press.

Hu, Y.-M., J. Meng, C.-K. Li, and Y.-Q. Wang. 2005. Large Mesozoic mammals fed on young dinosaurs. Nature 433: 149-152.

Hu, Y.-M., J. Meng, and J. M. Clark. 2007. A new Late Jurassic docodont (Mammalia) from northeastern Xinjiang, China. Vertebrata PalAsiatica 45: 173—194.

Hughes, J.L., and Siddall, M.E. 2007. A new  species of leech from the New York Metropolitan  Area. American Museum Novitates, in press.

Hyrenbach, K.D. and R.R. Veit. 2003. Ocean warming and seabird communities of the southern California Current System (1987-1998): responses at multiple temporal scales.  Deep-Sea Research II 50: 2537-2566.

Hyrenbach, K.D., RR Veit, H Weimerskirch and GL Hunt Jr.  2006.  Seabird associations with mesoscale eddies: the subtropical Indian Ocean.  Marine Ecology Progress Series 324: 271-279.

Hyrenbach, K.D., R.R. Veit, H. Weimerskirch, N. Metzl and G.L. Hunt, Jr.  2007.  Community structure across a large-scale ocean productivity gradient:  Marine bird assemblages of the Southern Indian Ocean.  Deep Sea Research I., in press.

Janies, A. W. Hill, E. Waltari, R. Guralnick, F. Habib, W. C. Wheeler. 2007. Genomic analysis and geographic visualization of the spread of avian influenza. Syst. Biol. 56:31-39.

Jansa, S.A., and R.S. Voss. 2005. Phylogenetic relationships of the marsupial genus Hyladelphys based on nuclear gene sequences and morphology. J. Mammal. 86: 853-865.

Jansa, S.A., J.F. Forsman, and R.S. Voss. 2006. Different patterns of selection on nuclear genes IRBP and DMP1 affect the efficiency but not the outcome of phylogeny estimation for didelphid marsupials. Mol. Phylogen. Evol. 38: 363-380.

Jefferies, R.L., R.F. Rockwell, and K.F. Abraham. 2003. The embarrassment of riches: agricultural food subsidies, high goose numbers and loss of Arctic wetlands – a continuing saga.  Environmental Reviews 11(4): 193-232. National Research Council of Canada, Ottawa ON.

Jefferies, R.L., H.A.L. Henry and K.F. Abraham. 2004. Agricultural nutrient subsidies to migratory geese and change to Arctic coastal habitats. Chapter 18, pages 268-283 in G.A. Polis, M.E. Power and G. R. Huxel (eds.) Food Webs at the Landscape Level, University of Chicago Press, Chicago, USA. 548 pp.

Jefferies, RL, RF Rockwell and KF Abraham. 2004. Agricultural food subsidies, migratory connectivity and large-scale disturbance in Arctic coastal systems: a case study. Integrative and Comparative Biology 44:130-139.

Jefferies, R. L., A. P. Jano and K. F. Abraham. 2006. A Biotic Agent Promotes Large-Scale Catastrophic Change in Coastal Marshes of Hudson Bay. J. Ecology. 94:234-242.

Jiang C, Gu J, Gu X, Chopra S, Peterson T.  2004.  Ordered origin of the typical two- and three-repeat Myb genes. Gene. 326: 13-22.

Jiang, Z, T. A. Castoe, C. C. Austin, F. T. Burbrink, M. D. Herron, J. A. McGuire,  C. L.  Parkinson, and D. D. Pollock.  2007. Comparative mitochondrial  genomics of snakes: extraordinary substitution rate dynamics and functionality of  the duplicate control region. BMC Evolutionary Biology 7:123.

Kamenz, C. and Prendini, L. An atlas of book lung ultrastructure in the Order Scorpiones (Arachnida). Bulletin of the American Museum of Natural History. In press

Kerbes, R. H., K. M. Meeres, R. T. Alisauskas, F. D. Caswell, K. F. Abraham, and R. K. Ross. 2006. Inventory of nesting Mid-Continent Lesser Snow and Ross’s Geese in Eastern and Central Arctic Canada, 1997-98. Canadian Wildlife Service Technical Report series, Winnipeg, MB. 54 pp.

Khan,H, A. Smit and S. Boissinot. 2006. The evolution of human LINE-1 retrotransposons since the origin of primates. Genome Research 16(1): 78-87.

Klaassen, M.E., K.F. Abraham, R.L.Jefferies, and Mark Vrtiska. 2006. Factors affecting the site of investment, and the reliance on savings for arctic breeders: the capital-income dichotomy revisited? Ardea 39: 371-384.

Klaus, A.V., V. Kulasekara and V. Schawaroch.  2003.  Three-dimensional visualization of insect morphology using confocal laser scanning microscopy. Journal of Microscopy, 212(2): 107-121.

Klaus, A.V. and Schawaroch, V.  2006.  Novel methodology utilizing confocal laser scanning microscopy for systematic analysis in arthropods (Insecta). Integrative and Comparative Biology, 46(2): 207-214.

Koons, DN, RF Rockwell and JB Grand.  2006.  Population momentum: implications for wildlife management.  Journal of Wildlife Management 70:19-26.

Kajumbula H, RG Wallace, J-C Zong, J Hokello, N Sussman, S Simms, RF Rockwell, R Pozos, GS Hayward and W Boto.  2006.  Ugandan KSHV phylogeny: evidence for cross-ethnic transmission of viral subtypes.  Intervirology 49:133–143.

Koons, DN, JB Grand, B Zinner and RF Rockwell.  2005.  Transient population dynamics: relations to life history and initial population state.  Ecological Modeling 185:283-297.

Krause, DW, P.M. O’Connor, A.H. Rasoamiaramanana, G.A. Buckley, D. Burney, M.T. Carrano, P.S. Chatrath, J.J. Flynn, C.A. Forster, L.R. Godfrey, W.L. Jungers, R.R. Rogers, K.E. Samonds, E.L. Simons, and A.R. Wyss. 2006.   Preserving Madagascar’s natural heritage: The importance of keeping the island’s vertebrate fossils in the public domain.  Madagascar Conservation & Development, v. 1, issue 1, p. 43-47.

Krishna, K., and D. Grimaldi.  2003.  The first Cretaceous Rhinotermitidae (Isoptera): A new species, genus, and subfamily in Burmese amber.  American Museum Novitates 3390: 10 pp.

Ladich, F., Collin, S.P., Moller, P. and Kapoor, B.G. (eds.) 2006. Communication in Fishes. Science Publishers Inc., Enfield, NH, USA

Lamboj, A. And M.L.J. Stiassny. 2003. Three new Parananochromis species (Teleostei, Cichlidae) from Gabon and Cameroon, Central Africa. Zootaxa 209: 1-19.

Lawson, R, J. Slowinski and F. Burbrink. 2004. A molecular approach to discerning  the phylogenetic placement of the enigmatic snake Xenophidion schaeferi   among the Alethinophidia. Journal of Zoology 263:1-10.

Lawson, R., J. Slowinski, B. I. Crother, and Frank Burbrink. 2005. Phylogeny of the  Colubroidea (Serpentes): New Evidence from Mitochondrial and Nuclear   genes.  Molecular Phylogenetics and Evolution 37:581-601.

Le Sy, V., A. Varon, and W. C. Wheeler. 2006. Pairwise alignment with rearrangement. Genome Informatics 17(2):141-151.

Le Sy, V., A. Varon, D. Janies, and W. C. Wheeler. 2007. Towards phylogenomic reconstruction. Proceedings of the 2007 International Conference on Bioinformatics and Computational Biology.